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Scientist finds early virus sequences that had been mysteriously deleted (nytimes.com)
332 points by gumby on June 23, 2021 | hide | past | favorite | 345 comments



Another good analysis, by Jon Cohen of Science: https://www.sciencemag.org/news/2021/06/scientist-s-hunt-cov...




Anyone else here incredibly disappointed in the discourse around the lab-leak hypothesis?

I'm not even talking about the truth of it. Instead the way the discussion has occurred and changed over time. In the earliest days it seemed implausible but possible, to suddenly fringe and impossible, then recently to something that _could_ occur.

At some point there was this weird, almost intentional, conflation of the idea the virus could have escaped in some way related to the labs in Wuhan with some sort of nationalist, uneducated caricature blaming the Chinese.

Worse still is the weird apologia, or cope, around the topic in these threads. People recognize the political reality, and it's easy to get distracted in threads tossing links around. But we still see weird arguments like:

- Oh there _was_ nothing wrong with it, but /most/ people were using it to be xenophobic or racist (QED).

- There was never anything really against the idea, but instead new evidence came out!

- Some flunky 'Bayesian' argument clearly proving one way or the other.

There's probably merit to each point above, but is that really satisfactory in light of how discourse was shaped? It actually feel likes gas-lighting. I don't track every comment, every article, and every casual conversation I have. But it has changed, the media has softened, the hostile atmosphere of the last four years is dissipating.

Before anyone starts screaming for sources - this is just some free-form thoughts on the subject. I'm a regular Joe. My contribution to this topic is hoping someone more qualified is able to look deeply enough into it. I'm also terminally online, and have read several hundred comments every day over this pandemic, and observed general trends.


You're not wrong. The quality of discourse is atrocious even by culture-war standards.

And I do think the culture war is basically to blame here. The lab leak proponents dialed up their rhetoric to 11, early on, without evidence. And the agenda (it can't be described as a "hidden" agenda) includes anti-China posturing as well as a strong undercurrent of undermining the credibility of science and scientists.

I empathize with people in the science community wanting to push back, but Daszak probably crossed ethical lines by covertly organizing the Lancet letter and by not declaring conflicts of interest (he's revised his CoI disclosures, which might be taken as an admission of getting them wrong earlier). It's also legitimate to question whether the science community is too trusting of Chinese scientists.

I do strongly support a real investigation, and am cautiously optimistic we can come to understand the origins. But the actual science story is pretty boring ("we still don't know") compared with all the intrigue. And public discussion is basically worthless, 99% of what's said is trivially derived from "where do you get your propaganda."

I don't have answers to any of this, but appreciate you bringing it up in this way.


That seems kind of backwards and circular.

The lab leak people did have evidence: the fact that the virus emerged right next to a lab doing experiments on coronaviruses. The people claiming it couldn't have escaped from the lab were the ones without any evidence. Their claims were basically "it wasn't from the lab trust us we're scientists".

The "anti China posturing" you say existed could also be described in other ways but if someone believes China allowed a deadly virus to escape from a lab and then covered it up, it's hard for that position to not be anti China in some way.

As for "a strong undercurrent of undermining scientists", as you admit, it turned out later that they had been dishonest so the people trying to undermine them were in fact doing the right thing.

It feels like you're trying to retroactively justify a dismissal of these claims by arguing that because their conclusions didn't fit with your notion of what good people think you were right to dismiss it. But that's not how argumentation is meant to work.


> The lab leak people did have evidence: the fact that the virus emerged right next to a lab doing experiments on coronaviruses. The people claiming it couldn't have escaped from the lab were the ones without any evidence. Their claims were basically "it wasn't from the lab trust us we're scientists".

You are way way underselling it. There's a ton of stuff we knew a year ago that were called conspiracy theories until a month or so ago, until suddenly the media is pretending they're both credible and were only just discovered.


> The lab leak proponents dialed up their rhetoric to 11

No. The media reporting on those proponents' theories dialed it to 11 to get clickbait titles for their articles.


> Koopmans says, adding that the preprint’s accusations could harm future collaborations on origin studies with Chinese researchers.

Does anyone thinks this is a wrong way to look at things? I haven’t read it, but if it’s just a hypothesis / fact finding document, there is no accusation.

Seems odd we have to tiptoe around this “or else” argument according to Koopmans.


When you have a former US president with a hold over an American politician party that has nearly 50% of the political power demanding more than $10 trillion in reparations, the discourse has moved away from "there is no accusation".


> a former US president with a hold over an American politician party that has nearly 50% of the political power demanding

The weight of that argument really went down (discredited it if you ask me) in light of the other accusations a former US president made before, during, and after his term. But he did highlight this effect really well:

> And when you're a star, they let you do it. You can do anything.


The preprint leans pretty heavily in the "if it's not for science reasons it can't make sense at all" on the question of why data was removed, stating:

> However, the current study suggests that at least in one case, the trusting structures of science have been abused to obscure sequences relevant to the early spread of SARS-CoV-2 in Wuhan.

This is unambiguously an accusation that the Chinese authors acted nefariously.

It'll be mildly interesting to see Blooms reaction to the stated reason they were removed "[because] the sequence information had been updated, was being submitted to another database, and [the owners] wanted the data removed from SRA to avoid version control issues". Though at a guess he'll just not comment, since waiting for a reply from the NIH about why the data was deleted wasn't important enough to delay spreading his preprint.


> Though at a guess he'll just not comment, since waiting for a reply from the NIH about why the data was deleted wasn't important enough

https://twitter.com/jbloom_lab/status/1407445641609957380?s=...

"Fortunately, Sequence Read Archive has rigorous data tracking enabling them to determine when data deleted & stated justification by authors. In fact, @NIHDirector @NCBI have already determined this & generously shared info w me, but will let them share more widely."


Interesting, in the discussion of the preprint he writes

> Minimally, it should be immediately possible for the NIH to determine the date and purported reason for deletion of the data set analyzed here

and then he goes on to say the thing about the trust of the NIH being abused.

The tweets and the preprint are from the same day, so it appears he indeed mostly just ignores the fact there is a know and plausible reason for the data being taken down.


> Does anyone thinks this is a wrong way to look at things? I haven’t read it, but if it’s just a hypothesis / fact finding document, there is no accusation.

Just because there's no intention of accusing China doesn't mean China wouldn't take it as an accusation.


Exactly!

since US knows China may take it as an accusation, it feels there is no way to avoid accusing China therefore does it anyway. There are tons of interesting theories and stories around the endless chain of suspicion. I'd say Trump administration did a great job at destroying all mutual trust between the two. Now both sides have to take the worst intention of the other side for granted.


You're trying to frame this as a scientists vs the everyman debate, but there were plenty of scientists who were against gain of function research and warned that this exact scenario could happen.


Seems like scientists with the training an experience to know what they are talking about say SARS-Covid2 doesn't look like the result of gain of function research.


Got a link? I'm interested to see how its even possible to distinguish that.


I think one. I can't vouch for any of the detail. (Just like almost everyone else)

https://www.nature.com/articles/s41591-020-0820-9

"Furthermore, if genetic manipulation had been performed, one of the several reverse-genetic systems available for betacoronaviruses would probably have been used19. However, the genetic data irrefutably show that SARS-CoV-2 is not derived from any previously used virus backbone"


When a scientist says 'irrefutably' that just means you should check their work even more carefully.

One of the authors of this paper is mentioned in the article, he's walked back his stance a bit.


I think “too trusting” is more like “too scared of committing career suicide.” Any reasoned discussion is drowned out by culture war BS, false dichotomy thinking, misrepresentation of statements to fit narratives, etc.


> dialed up their rhetoric to 11

There appears to have been several years when the then-president of the US frequently made statements which were "dialled up to 11".

Much of the media covering this period dialled their coverage, responses and rebuttals up to 11.

Once that behaviour gets entrenched, doesn't it reach a point where it's almost impossible to have a normal exchange?


> 99% of what's said is trivially derived from "where do you get your propaganda."

haha this is true of most topics.


When the Great Fire of London started in 1666 [0], it lasted 5 days non-stop, and consumed virtually all of the central part of London (mostly poor parts but not only). It was a huge effort to send belongings and people out of the city, save whatever could be saved and demolish the rest, for fire breaks. Surprisingly, death toll seems to be small (only 6 recorded deaths, though possibly undercounted, as mostly "poor people"'s town was burned), but an estimated 88% of the inner city was burned.

All the while this was happening, among the fire, the chaos of people fighting fire, people rushing away from the fire, or saving their belongings, there was a mob trying to lynch the presumed perpetrators. First it was the French and the Dutch immigrants, but throughout the saga, Poles, Jews, Catholics and other "aliens" were pursued. The presumed perpetrators changed without much rhyme or reason, merely according to whichever rumour was currently peaking, as the mob, and the fire, continued their steady march. All while the city was ablaze.

Interestingly enough, the cause of the fire is now known, and really should have been known at the time: it started from a small-ish fire at a bakery on Pudding Lane - a street that still exists, since central London was rebuilt on much the same street layout. It started small, but due to indecision wasn't tackled properly, grew a little, then grew a lot, then turned into an all-devouring beast that could not be stopped.

Some things don't really change.

[0] https://en.wikipedia.org/wiki/Great_Fire_of_London


Nice analogy, except for one essential part: French and Dutch immigrants did not have a history of blocking foreign investigations and covering up unwelcome information.

The Chinese have largely themselves to blame for the current suspicions against them. If they had been transparent from the start, the speculations would have been far fewer.


Well, the analogy might in fact be better than I thought: suspicion was initially cast at the Dutch and French since there were recent real wars with these countries (never mind “soft” combat like blocking investigations etc).

As an aside, I’m not taking a side in “blame” on China. I’m really only talking about the public opinion side of things. The cause of the fire was found through an investigation, and had nothing to do with the mob “crowdsourced” sleuthing. And the mob kept changing its mind as to who is to blame.

Sounds to me a lot like NYTimes saying one time “of course it’s not China you bigoted racist” to “ooh questions are being asked and it’s suspicious we don’t have answers” without any real change in available evidence.


Transparent by whose definition? Any investigation can be weaponised very easily. I remember seeing a tweet from one of the western scientists in China claiming the NYT misquoted them regarding the transparency & data they'd been shown.


Does that make sense in this situation?

Like the leading idea is that it occurred naturally, and there's heavy emphasis on it starting in that wet market. More than enough ammo already for the mob to hate on Chinese people, and sadly that's what happened and has been happening.

Suppressing inquiry into a possible source of the pandemic seems more like political shenanigans than some vague effort to save the population from harm.


Criticizing another country behavior is not xenophobia or racism. There is a totalitarian regime in China that controls the bahaviour of China.

Modern censorship has the protocol of calling names to ideas or opinions that they don't like, prior to "cancelling" them, like calling homophobic the people that disagree in their opinions about homosexuality with what mainstream media says the opinion should be.

The theory of lab escape was very obvious from the start for experts in the field. I talked with laboratories chiefs after the pandemic and every single of them told me it was the main hypothesis. But none of them went public about it at first because simply the West needed China in order to fight the pandemic.

The fact is that China did wrong here, but there is hypocrisy in the Western world. The West put taxes into CO2 so energy prices go through the roof but China does not pay taxes so it has a big competitive advantage over the West. The West buy products made in China because they are cheaper(because they don't have taxes on CO2 or pollution regulation[regulation exist but nobody complies with it in practice] or protection against verbatim copying products).

Lab research is controlled in the West with very stringent set of regulations, so the West subcontracts China research because it is way cheaper and the safety measures are a joke, not in my backyard.

The US financed (outsourced) the lab research done in Wuhan. Bill Gates and so many others did too. While the West is arguing about ethics, China is doing experiments with human embryos because in China there is no such a thing as ethics. So Western companies put money in Chinese laboratories to do what they are forbidden to do in their native countries.


Why blaming Wuhan lab leak is "nationalistic" or "caricature". China is a communistic country, it cannot care less about anything besides standard communistic agenda, gathering more power, winning more influence, spreading "revolution". Was crashing freedom in Hong Kong necessary? Is Urguys and Christians persecution needed? Did they care that their rocket debris might fall of the sky on some large India city and kill 5 million people? Do they care about factories that dump wastes directly to rivers and thanks to that they are cheap? And so on.

There is a great book by Kissinger about China that explains a way of thinking Chinese rulers have. That was stroked me most was a chapter about early conflict between US and China (in Mao times). US were trying to frighten Chinese rulers with nuclear weapon, but Chinese answer was that even if US strike them that way and kill 300 million people, there is still 700 millions alive.

If you look on Covid from that perspective, the mess in some lab in Wuhan sounds very plausible. For Europe/US it is a big problem, for China it is a big opportunity.

In Europe/US there is a lot of regulation concerning research (ethical, security) that just don't exist in China. We don't know what they do in terms of genetic modifications, cloning, bacteriology, etc. The fun fact is that western companies are eagerly investing in such research in China as they are cheaper and they don't need to care about boring stuff like ethics.

We should be scared.


Something to reflect on : should we be scared of the people who didn't care about 300m deaths, or the people who threatened to kill 300m people?

BTW. I don't believe that story - Kissinger was a lot of things but he and Nixon were not in the 50 Hitlers league.


Do I have to pick just one?!


patriots pick the right one.


Ah yes, the Harry Potter-esque spell to conjure jingoism: "Withhus Orragenstus!"


Good ol' Bush-era rhetoric


> Something to reflect on : should we be scared of the people who didn't care about 300m deaths, or the people who threatened to kill 300m people?

Something else: should we be more scared of countries with a confirmed history of genocide and using weapons of mass destruction against cities, or China.


China has a confirmed history of genocide and a confirmed history of mass violence against its own citizens.


> Something else: should we be more scared of countries with a confirmed history of genocide and using weapons of mass destruction against cities, or China

To be fair, China is also doing their own genocide against the Uyghurs.


Supposedly during the second world war prior to America's entry into the war, there was a joke about china's approach:

An American is on a steamship with a Chinese steward. The news reports the Japanese had lost 25 soldiers that day and the Chinese 250. The next day it's worse, the Japanese lost 35 men and the Chinese 500. On the third day, the numbers are 50 Japanese and 2000 Chinese troops. All the while, the Chinese steward simply smiles. Finally, the American asks him how he can be so happy, given the news. The Chinese gentleman simply says "Pretty soon, no more Japanese".


>Chinese answer was that even if US strike them that way and kill 300 million people, there is still 700 millions alive.

That is just how it is done in that corner of the world. Fight for your Motherland until the last man standing, and individual lives have no value. USSR lost 30M in WWII so that remaining 170M saw the Victory Day. Stalingrad was basically a meat grinder.


The USSR was fighting for its existence in a war of extermination. Sacrificing lives was not really a choice but rather one of the rare advantages they could press.

Smaller Eastern European countries had even more appalling losses, not because of their disregard for human life, but because of their enemies' appetite for murder.

Stalingrad was a worthwhile strategic objective, if I'm not mistaken. Keeping the Wehrmacht engaged also gave the Soviets an opportunity to stage the massive pincer that broke the Wehrmacht's back and damn near knocked its allies out of the war


Dictators tend to be a lot more willing to sacrifice masses of their people to preserve their rule than the subjects are to take that particular path, even if surrendering to the Nazis did sometimes lead to an equally-bad outcome as fighting. But Stalin had just recently purged all potential rivals and opposition so there was no one to stop him internally.


It's social media. These days we aren't allowed to discuss anything philosophical or scientific, without having it called a "dogwhistle for <something_bad>", and then a few thousand people pile on you, and someone posts a death threat because you're some type of racist or bigot. And some of these people work for organisations that are supposed to promote scientific enquiry, skepticism and rational thought.


I think we should start adopting the term 'tinnitus' when people argue with 'dogwhistle'. Just because a person calling X a dogwhistle of Y doesn't make it so.


Remember: If you think you are hearing a dogwhistle, perhaps you are the dog.


> It actually feel likes gas-lighting.

There is a really interesting dynamic in political debate. I'm going to pick on Ivermectin as a COVID treatment, for example. There is official guidance on Ivermectin [0] that says "So, currently there is no clear information that confirms whether ivermectin works as a COVID-19 treatment."

So what is interesting is that there are then a large number of largely faceless/anonymous opinions that Ivermectin is obviously totally proven/totally disproven as a COVID treatment. Anyone discussing the evidence either way runs the risk of being censored.

But when the official position is taken, all the faceless opinions on the wrong side will vanish. If something like Ivermectin proved to be workable then anyone advocating for it will find this weird situation where they were right but no-one official ever argued with them and it is sorta mysterious where the pushback came from.

Ditto the reverse, where if it is disproven as a treatment then there will be a weird situation where it was only ever a tiny fringe of people who cared. This effect is very frustrating in political debates, but does in a sense incentivise people to be clear in their positions. Debating anonymous opinions doesn't actually help and is a trap a lot of people fall in to.

[0] https://www.nps.org.au/ivermectin-and-covid-19


If only the debate around vaccines worked like that.


People will never accept that they followed the word of “experts” as if it was religion, and lacked rational thinking and original critical analysis.

It’s 2021, we have the Internet and yet the masses were still as easily manipulated as the people in the 60’s who only had the TV and newspapers.


You really notice this if you're outside mainstream social networks. People at some point start to have infinite discussions IRL about some new uninteresting topic you never heard about like it was the most important thing in the world.

You listen them argue with polarized and surprisingly well defined opinions, like they're reciting some script they're supposed to follow to defend their faction of choice. You change social circle, like go from friends to family, to find the very same discussions with the same factions and the same detailed, almost scripted arguments.

Meanwhile you keep wondering why they even care, and why they're so passionate about it, it's like they're under some kind of spell which for some reason didn't work on you.


Can confirm; have been living under a rock, and it’s bizarre. Doubly so if the topic is something with which you have real-world experience. It’s so clear people are living in a weird propaganda world.


I have a large Indian family. Nobody is writing newspaper articles about it. The same thing happens with family gossip. You’re describing basic human social dynamics.


The illusion of openness can be more convincing in the case of the Internet. It isn't just a talking head telling you what to think on TV, it is a collection of curated and censored opinions from a simulated peer group.


Yes I agree. As someone who works with programmatic advertising technologies, I struggle to convince friends that 80% of what they see in a screen has been decided by a third party and it is not them “looking for it”.


> People will never accept that they followed the word of “experts” as if it was religion, and lacked rational thinking and original critical analysis.

> It’s 2021, we have the Internet and yet the masses were still as easily manipulated as the people in the 60’s who only had the TV and newspapers

I really don't know why you're assuming that the average person is capable of doing sufficiently qualitative research with Google to be better than a epidemiologist at fighting a pandemic.

On the contrary, the internet makes it so that anyone can say anything they want. YouTube video saying the lizard people gave the virus? A epidemiologist-union.org website or a Facebook post claiming the same? How can you expect people without good web skill, without prior knowledge, without academic rigor to be able to filter out what is real and what is not?

The best advice is listen to the fucking experts, locally and globally, think about it, compare with reputable online sources. If in doubt, doubt, discuss, search more information. But don't go against official public health guidance unless there are many officially qualified experts confirming your doubts. And even that kind of rough advice is too hard to follow for a person barely capable of Office and Facebook.


Turns out the "fucking" experts were mostly afraid that their careers and "gain of function"-research could loose their grants and connections.

Money and PR have eroded away the societal trust into science. Tobacco is harmless. Sugar is healthy. Social science topped it off, when it declared that he who yells loudest, is always the one owning the truth, which is relative and just a display of power.

Little, big lies, that now have eaten their way into the core of the whole institution, from the point of view of the common men. No solutions for the big problems (energy/environment protection), but lots of small problems, while flooding the world with un-replicatable drivel. And getting demeaning and insulting does not repair the damage.


One problem is I need to be an expert to decipher what the experts are saying (and who is an expert, and which experts to listen to).

So instead I rely on various secondary and tertiary sources to help me make sense of the world, which opens up the possibility that my sources are wrong or even manipulative. But how would I ever know? I'm not an expert.


> One problem is I need to be an expert to decipher what the experts are saying (and who is an expert, and which experts to listen to).

No you don't? Probably most countries have health ministries which lead the fight against the pandemic, usually via some proxy ( like head epidemiologist, or a person appointed specifically for that task). The guidance they and the WHO gave is the expert guidance, and at least the latter was given in a very digestible format for the general public.


WHO and CDC guidance were murky early on (made even less clear by people actively trying to confuse people). Consider the confusion about whether asymptomatic spread is possible (WHO not effectively communicating the difference between "truly asymptomatic " and presymptomatic), or confusion over whether to use masks (getting translated into "masks don't work" by the game-of-telephone that is social media).

Or consider the controversies over drugs used to fight COVID-19. People advocating their use were physicians -- that makes them experts relative to me. Then other physicians said no, they don't work and are dangerous. They are also experts. Who am I to believe?

This problem goes beyond the pandemic. Doctors of medicine use jargon derived from Greek and Latin both for historic reasons and with the purpose of creating an air of authority. But when someone comes along and usurps that language, it sounds to an uneducated ear like the real thing. That's how we end up with people drinking special water to alter blood pH to prevent cancer. Absurd? Maybe. But if you have letters after your name and I don't, how can I know?


> The best advice is listen to the fucking experts, locally and globally, think about it, compare with reputable online sources.

The “experts” have been exposed lying, and carrying out their own political agendas many times throughout this pandemic. The appeal to authority is a logical fallacy in the first place, and “expert” credibility is (rightly) at an all time low. It’s now almost entirely evaluated politically, rather than on any criteria of trustworthiness.

I would suggest the best advice is to treat everything you hear/read with a healthy dose of skepticism, especially in regards to people who rely heavily on their credentials to deflect criticism.


> The “experts” have been exposed lying

This is the biggest problem that social media has brought us. Everyone is under scrutiny, afraid of the mob, afraid of losing their job. Too many experts go along with the dogma-de-jour. And then, like we're all idiots or something, they just "flip" and say the opposite, thinking we won't notice, because scrolling back 3 months on Twitter is hard.


I think the fundamental issue is that the most important factor in succeeding as a politician (and I mean that in the broader sense of anybody who takes on political accountability), is the art of avoiding accountability entirely. The truth often stand directly in the way of that objective, so this idea of the scientific politician is already starting off as a bit of an oxymoron.

Another problem is that politicians are just fundamentally bad at risk management. I’m sure we’ve all worked with those types of politicians at least once. They never want to try anything, because the risk it will fail is unacceptable, and the most important part of solving any problem is finding somebody else to blame. Politicians in public office are the worst at this. I used to live in a place where road deaths where a big cause for public concern, and I watched somebody get elected to office on the platform of reducing road deaths to 0. Now, anybody with any experience in risk management would know that attempting to reduce the likelihood of any risk to 0 is not only a bad idea, but is just simply impossible. The goal of risk management is to reduce the likelihood and impact of risks to an acceptable level, but a politician can’t stand in front of a news camera and say “an acceptable number of people died on our roads this year”.

I think even if you left the risk assessment portion of pandemic management entirely to the “experts”, it’s this deeply flawed style of politically managing these risks that has been biggest source of controversy. To start making risk management decisions on behalf of other people, it is necessary to curtail their liberty, and regardless of how medically unqualified the general population is, they can plainly see that a lot of the policy decisions around the pandemic have been very politically influenced.


> The “experts” have been exposed lying, and carrying out their own political agendas many times throughout this pandemic

That will depend on a per country basis. In the ones i followed there were no lies, only revisions in guidance based on better knowledge of the situation.

> The appeal to authority is a logical fallacy in the first place, and “expert” credibility is (rightly) at an all time low.

Yes, and that's how we got shit like Trump and Brexit, because people are "sick of experts" and decide to yolo it for the guy screaming the loudest. Guess what, that doesn't work, and you're much better off listening to experts, and evaluating what they're saying, rather than ignoring them and going with the village idiot. Experts can lie, be frauds, have conflicts of interest, etc. but their reputation and credibility are paramount. Which politicians or talk show hosts, because that's apparently who people take their pandemic guidance on, are credible?

> I would suggest the best advice is to treat everything you hear/read with a healthy dose of skepticism, especially in regards to people who rely heavily on their credentials to deflect criticism

And by having everyone doubt everything, you end up with people believing in Q shit in Germany. Skepticism is critical, but too much of it just creates chaos.


Personally, I’d generally consider blaming outcomes that you don’t like on people exercising their freedom to think for themselves too liberally to be a particularly low-effort criticism. You should always be skeptical of everything, you should be especially skeptical of people who claim their credentials place them above scrutiny. This is the very basis of critical thought, you can never have enough of it, and people being free to think for themselves is the most fundamental form of liberty.


Seems to me like experts are just following the herd advocating the things most politically palpable. For example, the public likes travel restrictions, and (a sizeable subset of them) become viciously outraged over herd immunity, so whatever scientifically-based policies countries had previously are dropped under the guise of supposedly learning more. Yeah they learned better how to keep their jobs.


welcome to the backlash to the backlash to conspiracy theory culture.

its not a wonder why we cant have rational discussion when theres a constant reverberating noise of irrational conspiracy theories.

anyone who really considers the global propaganda should understand by now thst this is intentionsl. degrade scientific rationality, democracy and good governance by pumping FUD into any critical corner.


Absolutely! 5g is another area where this is happening. If you read literal industry whitepapers and peer reviewed articles about mm wave antenna arrays, the biometric sensing applications and corresponding privacy concerns are quite literally spelled out. There are entire industries being built around these applications and hosts of highly qualified researchers openly collaborating with corporations. Meanwhile these towers, which are effectively biometric radars, are going into cities across the country with zero informed public conversation.


Could you kindly share a few links that you deem most informative and reliable? Thank you



I'm genuinely curious. Could you provide at least a couple links to said papers?


Yes, here is a comment with some links: https://news.ycombinator.com/item?id=22480444


Do you have some good articles that give an overview over this?


There are some links in this comment: https://news.ycombinator.com/item?id=22480444


Truth is there was never a problem with the lab escape idea. Problem was that it was first brought to main stream by Alt-Right / MAGA crowd and sadly in the current (or at least in that time's) political climate if we disagree with even one thing everything you say has to be treated as information hazard of the most toxic nature. Left is not alone in this, it goes both ways. No matter how good points the other side is making since we disagree on which old guy should sit in the White house we have to disagree on everything else as well.


It was half to make Trump look like a racist / idiot, half to protect China from sanctions.

I guess it was a risky move, hoping that evidence wouldn't popup (or come out late enough to make sanctions worth (b|tr)illions improbable).

Yet, the most significative thing about this story is that a move was made.

Probably the biggest case of foreign propaganda we've seen until now.


I call it the "Orwellian flip", when the sentiment on an opinion goes from "you must not express this opinion, on pain of being politically incorrect" to "oh no, that was true all along, and we always said so".


> At some point there was this weird, almost intentional, conflation of the idea the virus could have escaped in some way related to the labs in Wuhan with some sort of nationalist, uneducated caricature blaming the Chinese.

I doubt anyone has argued that the CCP deliberately spread COVID19 to the world because it is Chinese. Taiwan and Hong Kong are also Chinese, and would be primary targets of such an attack. Who dislikes the Taiwanese?

The presumptive reason for an aggressive "unprovoked" WMD use would be because China is a Communist dictatorship. Those have an aggressive track record, to put it mildly.

I say "unprovoked" in quotes because CCP media will gladly list many provocations, and aren't they the ones whose opinion counts when inquiring as to motive?

If there's something Chinese about this, it might be the unconventional warfare aspect, from the culture that gave us Sun Tzu.

Maybe the real racists are those who assume that Chinese Communists would not attack a stronger opponent in an indirect and clandestine manner. Isn't that projecting one's value system onto another?

Since WWII, the USA has strong-armed the world into accepting the USD as reserve currency, permitting the US oligarchy to "tax" them by creating new USD ex nihilo via financial wizardry. Armed robbery, even when state-sponsored, often inspires armed resistance. Don't go crying, "He hit me for no reason!" when you're holding his lunch money.

Apparently you can't say this, since I always get downvoted when I do. I have yet to hear an answer.


> Oh there _was_ nothing wrong with it, but /most/ people were using it to be xenophobic or racist (QED).

Wait but less flippantly phrased this was exactly the problem earlier on.

People who wanted to absolve our own abject failure to prepare or deal with the virus started acting like the lab leak theory was a proven fact and thus since it was all chinas fault we could stop quarantining and if only we frothed with nationalistic sanctimony our lives would return to normal.

The problem was three fold. 1) the leak was an especially unproven theory back then with very little evidence either way, i.e just pure speculation. 2) the way it was used to absolve ourselves of being ill prepared, even if it wasn’t speculation there is no excuse for our preparedness 3) it was used for racist propaganda and we don’t need to sound like America is moving to Japanese internment camps 2.0, China edition. It’s not helpful and just gives the CCP propaganda fodder that harms our actual efforts resolving our justified grievances against the Chinese government.


I think this is a problem with modal logic. There are important nuances between what is true, what is likely and what is possible. In my experience, people are not good at perceiving those nuances and personal bias often erases them. It can go in one of two ways: (1) It is possible and I like the idea so it is true; (2) It is possible but I do not like the idea so it is false. Now what happens when lots of people indulge in (1) for a particular topic (here the lab leak hypothesis) ? Then you will have lots of "serious" people forcefully pointing out correctly that there is no evidence that this is true, since it is merely a possibility. But since people do not perceive the nuance, they will interpret that as meaning that the "serious" people believe it to be false. When the group indulging in (1) stops monopolizing the conversation, the nuance reemerges and it appears like it becomes a possibility again.


I think you need to realize couple of issues:

- While the disease was spreading it probably made more sense to focus on dealing with the disease. Focusing on blame would probably take away from the efforts and clear message needed to combat the actual problem. As an example, see how any information about people hurt by the vaccine actually caused more problems. There is probably orders of magnitude more people dead or going to die because of reluctance to take the vaccine that would ever be hurt by the vaccine itself.

- There is probably intentional and unintentional misinformation war happening in social media that for me or you is difficult to quantize or understand effect of. I find it likely there are state actors trying to influence public opinion on various matters or at least make various points moot. Add to this misinformation from various (I will call them amateur) groups that spread it based on rumor or feelings or pure conjecture without any facts to back it up. Then there are people who are responding to this misinformation, without having any facts themselves.

All of this is going to make it difficult to understand where these shifts come from but not difficult to understand why they are happening.


Early on, I found myself thinking that the idea that it came out of a wet market and couldn't possibly have come from a lab, to have its own wierdly racist overtones. I think someone recently tweeted as such too, and I felt "slightly less crazy".


The thing I find amusing/terrifying is that people are now claiming the moral high ground over how it was handled originally (context be damned), while still using it as a political stick to beat people with - one key point here is the distinction between political and partisan disputes.


if you re-examine some famous virus history books like The Coming Plaque from the 1990s you realize that the escape form labs theory is not new but recycled propaganda. It happen with Ebola and several others and it was on both sides of the cold war with the CIA and KGB pursuing distributing those theories.

We have to find some way to subtract the political infighting from the public health motive to find the origins of this virus outbreak.


When has censorship been anything but a tool of authoritarians?


my hunch is the ccp is powerful at manipulation and convinced the left that lab leak theory is “racist” but somehow saying they eat bats isn’t. (likely to cover up for the fact it was lab leak)

and the establishment is very easy to manipulate with the R word


Part of the driving philosophy of much of the left these days is collective (and hereditary) responsibility by race. So it's easy to see how, by projection, they would think that Trump saying it came out of the Chinese lab and calling it the "China virus" is blaming Chinese people as a whole.


Article is Paywalled but its basically about this twitter thread from Bloom Labs:

https://twitter.com/jbloom_lab/status/1407445604029009923

This technical bit is interesting - although the data had been 'deleted' from the Sequence Read Archive* web app by the original submitter, this tweet explains that they were able to recover the data via storage.googleapis.com:

https://twitter.com/jbloom_lab/status/1407445615248691201

I discovered that even though the files were deleted from archive itself, they could be recovered from the Google Cloud at links like https://storage.googleapis.com/nih-sequence-read-archive/run... (5/n) ...

So technical question for HNers - what lives at storage.googleapis.com usually? Was that like a cloud mirror or was it more like the 'delete' function in the web app was only removing things from the index but leaving the deleted stuff accessible?

* Sequence Read Archive seems to live at https://www.ncbi.nlm.nih.gov/sra


Most likely the latter: the server-side code in charge of deleting data did not make a call to their storage api to also remove the object itself. There's a good chance that is intentional and serves as a soft-deletion function, such that it could be reverted (or the data otherwise used) if needed.


That was my read on this too and Dr. Bloom accidentally hacked the NIH. The next question though is whether they’ll change this or not? Is the guarantee that anyone can retract at any time important enough to make the db useful? Will the Chinese government mandate no one there ever use it again now?


Acting in the sense of as a devil's advocate here, but this guy went and rooted around a data repository for stuff that wasn't his... there was a case a few years ago of a guy who scripted the AT&T site to download similarly accessible data [0] and got 4 years jail for it. We can trot out the well-known Swartz story [1] here as well.

Though I'm happy to have the information available in this particular case, I can't really say this is different in terms of either the letter or spirit of the law.

So: when should we expect to hear this guy being charged with CFAA violation? I'm not holding my breath, and I hope he doesn't, but what he did seems as clear a violation of the law as the two examples listed here.

[0] https://www.wired.com/2013/03/att-hacker-gets-3-years/ [1] https://en.wikipedia.org/wiki/United_States_v._Swartz


Dr. Bloom accidentally hacked the NIH.

In case this is why this comment was downvoted, it's worth remembering that others have been charged with CFAA violation for basically the same thing.


Reminds me of this guy that got fined $4k by the court for something similar ?

https://arstechnica.com/tech-policy/2014/02/french-journalis...


They were supposedly storing artifacts publicly available on GCP's object store, an efficient way to do things for distribution of non-secure large pieces of data.

"delete" deleted the reference to these objects but the objects were kept around. (This is a not-so-bad practice, if you're hacked and somebody tries to wipe everything, or some bug or fat finger deletes everything, you've deleted references to data not actual data)


You really should clean up your soft deleted objects. They are a perfect place for hackers to get data that you thought was gone.


If you are in the business of publishing scientific data, maybe you want people to be able to find "deleted" data, or at least you're not too concerned with really intensely enforcing people's abilities to delete something they have published.


It was also discussed here yesterday:

https://news.ycombinator.com/item?id=27598222

https://www.biorxiv.org/content/10.1101/2021.06.18.449051v1

Unless this is a new instance of mysterious sequence deletion.


There's no obvious reason to believe this is nefarious or even "mysterious". From the WaPo article[1] on the subject here's the statement from the NIH (which maintains the database)

“These SARS-CoV-2 sequences were submitted for posting in SRA in March 2020 and subsequently requested to be withdrawn by the submitting investigator in June 2020. The requestor indicated the sequence information had been updated, was being submitted to another database, and wanted the data removed from SRA to avoid version control issues"

[1] https://www.washingtonpost.com/health/coronavirus-origin-nih...


The good bit is author of the preprint apparently knew this reason the same day he posted his draft, but the draft doesn't mention it.


There was some prior discussion on this submission from yesterday, though it fell just short of the front page: https://news.ycombinator.com/item?id=27598222

The source paper (https://www.biorxiv.org/content/10.1101/2021.06.18.449051v1) or Twitter thread (https://twitter.com/jbloom_lab/status/1407445604029009923) are probably better sources than the New York Times article based on them.


This is such a "funny" mess!

In computer security, if obscure researcher Bob discovers that a few instructions can theoretically be used to steal Joe's passwords at the random location in memory where they are by burning the CPU using some webassembly, we make a huge deal of it. We slow down all CPUs in the world overnight to cope with that thus-far _theoretical_ attack, threaten the CPU designer with class action lawsuits, and hail Bob as a hero.

With this virus, we are doing the opposite: we are distributing the patch (vaccine) at glacial speeds (while our economies burn). No "hardware hardening" is being discussed and we are not bringing a class-action lawsuit against God for all His vulnerabilities. All we are saying is "This is your fault Bob, we are going after you!"


>we are distributing the patch (vaccine) at glacial speeds (while our economies burn).

Be fair - the vaccine development and distribution program is by far the fastest in history and has wildly exceeded even the most optimistic predictions at the beginning of the pandemic.

Also, consider how long it took Amazon to build a global distribution system for things like books and cheap gifts. 10 years? Maybe more...

Now "hardware hardening" - what would that be in your analogy?


> Be fair - the vaccine development and distribution program is by far the fastest in history and has wildly exceeded even the most optimistic predictions at the beginning of the pandemic.

Maybe so, but what would happen if bad actors had the capability to create viruses easily? My understanding is that the tech for it is already around the corner, if not currently available. Are we just going to trust that bad actors won't have the motivation to use them? Returning to my compsec analogy above, Bob and the rest of the compsec good guys don't care about any possible motivations, just that it is possible. For the record, I'm not 100% for that approach, but it seems to be the way things work.

> Now "hardware hardening" - what would that be in your analogy?

We have an immune system that--for the most part--works. It does cause terrible diseases in most people[^1] , and there is a bunch of things that it's not very good at, specially for old folk. Maybe it, and the rest of the system, needs some "technical love"? Honestly, we are technologically far from being able to completely fix it, but I would be happy if we had the same heated and open discussions about that backlog --and what can be done with it--the same way we have about practically anything else.

[^1]: https://www.webmd.com/a-to-z-guides/autoimmune-diseases


There are several, perfectly legit, possible reasons for that

DNA databases are known to have a small percentage of corrupt data, specially early data. There is not anything strange in modifying or deleting an item in a database. Database managers do it all the time when finding an error.

Maybe those sequences were duplicated. Maybe they were wrongly translated but nobody noticed it until the covid suddenly became very popular. Maybe the publication that provided this data were bad science and retracted later. Fixing a bunch of mistakes in taxonomy that sleep for years until a specialist came and reviewed the old material is not uncommon in biology.


Many people falsely assume that anything leaked from a lab was made in a lab.


That's not why people think the virus was made in a lab. The reason people think it was man-made have to do with strangely well-adapted protein sequences found on the virus with no known natural ancestors. Virus evolution requires hosts and time. The nearest common ancestor to this virus is not a good candidate for SARS-COV2 and there are no known intermediate ancestors in the thousands of animals tested.


> The reason people think it was man-made have to do with strangely well-adapted protein sequences found on the virus with no known natural ancestors.

I was under the impression it was a natural sequence, I read about it way back in the beginning:

https://www.labmate-online.com/news/laboratory-products/3/br...

They found that the spike protein, a receptor-binding domain (RBD) that hooks onto host cells, had evolved to target ACE2, an enzyme founded on the outer surface of human cells that helps to regulate blood pressure. The team say the COVID-19 spike protein is so efficient at binding to human cells that it could only be a result of natural selection, not artificial engineering. Another tell-tale sign of natural origins is the molecular structure of COVID-19, which is substantially different from other known viruses. Rather than mimicking other viruses known to cause severe illness in humans, COVID-19 more closely resembles strains of coronavirus found in bats and pangolins.

"These two features of the virus, the mutations in the RBD portion of the spike protein and its distinct backbone, rules out laboratory manipulation as a potential origin for SARS-CoV-2" says Andersen.


The fact that the virus emerged already well adapted to human cells is a primary reason to suspect something's off. How could it be so well adapted right after making the jump to humans? And why have no closely related precursors been found in the wild?

A hypothesis which addresses both questions is that the virus evolved in humanized mice. That would also explain why it doesn't look genetically engineered; it wasn't, the mice were.


Because it wasn't. It evolved to become this way. But on the path to this evolution it was not anything of note and no one would notice it.


Nobody noticed the precursors to SARS and MERS either, until those emerged in humans. But once they did, the precursors were quickly found in civets and camels, respectively.

A reminder: https://www.technologyreview.com/2021/03/26/1021263/bat-covi...


It took half a decade for SARS. It wasn't immediate by any stretch of the imagination.


> It took half a decade for SARS. It wasn't immediate by any stretch of the imagination.

It took less than a year from outbreak to publication:

https://science.sciencemag.org/content/302/5643/276


Fauci emails reveal that Kristian Anderson originally raised concerns that it was a lab leak based on analysis of the virus before he was brought to heel by Peter Daszak. His later water-carrying for his GoF comrades was, I hope, the low point of his career.


I don't understand that argument. Wouldn't serial passage through human lung cells produce efficient bindings? Is that sort of artificial selection not what they meant by "laboratory manipulation?" If they mean it's not the product of genetic engineering then sure, but leaving out the possibility of serial passage is misleading at best.


The rapid evolution (gain) between the wild virus and Alpha and then Delta and now Delta+ indicates to me that if there was a gain of function experiment in the evolution of this virus then it was stopped far too early!

Also it seems tuned to infect Mustelidae - like the Mink in Belgium and Holland, and Ferret Badgers. The thing about that is that why would that be if you were passaging it through mice? Mustelidae are going to be a pretty difficult lab target in comparison to mice (they bite, they're big, they take a season to mature). The fact that Ferret Badgers were sold for meat in the Wuhan market is pretty interesting in this context (although none of the animals tested had Cov19).


Ferrets are commonly used in serial passaging and gain of function research.

https://nymag.com/intelligencer/article/coronavirus-lab-esca...

> In 2011, a tall, confident Dutch scientist, Ron Fouchier, using grant money from Fauci’s group at NIH, created a mutant form of highly pathogenic avian influenza, H5N1, and passaged it ten times through ferrets in order to prove that he could “force” (his word) this potentially fatal disease to infect mammals, including humans, “via aerosols or respiratory droplets.”

https://www.salon.com/2020/11/29/covid-19-mutations-spread-m...

> Because ferrets are the animals most like humans in terms of how their immune systems respond to influenza, scientists have experimented with them to make existing viruses more deadly, a biowarfare concept known as "gain of function" research.


I don’t know if it counts as “rapid” given the infected population and time scale involved. Getting from the original COVID-19 to Delta+ in a lab would take a long time compared to in the millions of infected humans ‘in the wild’.


It's a single nucleotide mutation. I don't see how the dozens of nucleotides from before would have been easy but the last nucleotide would be impossible.


COVID-19 could be the base discovered that they saw in lab experiments gaining function, evolving rapidly, and so an ideal candidate as the base starting point - where now there's the four variants - and who knows how many more variants may escape with the mRNA vaccine most effective only for the original strain and arguably exponentially less effective against the evolving variants.


That article is reporting on the letter by Andersen et al [1] that Nicolas Wade addresses in his article in the Bulletin of the Atomic Scientists [2] that was published a few weeks back, right around the time the lab hypothesis started gaining steam; it's still probably the strongest case that's been made for it. I think it dispatches the Andersen letter quite handily, but YMMV:

> A second statement that had enormous influence in shaping public attitudes was a letter (in other words an opinion piece, not a scientific article) published on 17 March 2020 in the journal Nature Medicine. Its authors were a group of virologists led by Kristian G. Andersen of the Scripps Research Institute. “Our analyses clearly show that SARS-CoV-2 is not a laboratory construct or a purposefully manipulated virus,” the five virologists declared in the second paragraph of their letter.

> [...] True, some older methods of cutting and pasting viral genomes retain tell-tale signs of manipulation. But newer methods, called “no-see-um” or “seamless” approaches, leave no defining marks. Nor do other methods for manipulating viruses such as serial passage, the repeated transfer of viruses from one culture of cells to another. If a virus has been manipulated, whether with a seamless method or by serial passage, there is no way of knowing that this is the case. Andersen and his colleagues were assuring their readers of something they could not know.

> [...] The two reasons the authors give for supposing manipulation to be improbable are decidedly inconclusive.

> First, they say that the spike protein of SARS2 binds very well to its target, the human ACE2 receptor, but does so in a different way from that which physical calculations suggest would be the best fit. Therefore the virus must have arisen by natural selection, not manipulation.

> If this argument seems hard to grasp, it’s because it’s so strained. The authors’ basic assumption, not spelt out, is that anyone trying to make a bat virus bind to human cells could do so in only one way. First they would calculate the strongest possible fit between the human ACE2 receptor and the spike protein with which the virus latches onto it. They would then design the spike protein accordingly (by selecting the right string of amino acid units that compose it). Since the SARS2 spike protein is not of this calculated best design, the Andersen paper says, therefore it can’t have been manipulated.

> But this ignores the way that virologists do in fact get spike proteins to bind to chosen targets, which is not by calculation but by splicing in spike protein genes from other viruses or by serial passage. With serial passage, each time the virus’s progeny are transferred to new cell cultures or animals, the more successful are selected until one emerges that makes a really tight bind to human cells. Natural selection has done all the heavy lifting. The Andersen paper’s speculation about designing a viral spike protein through calculation has no bearing on whether or not the virus was manipulated by one of the other two methods.

> The authors’ second argument against manipulation is even more contrived. Although most living things use DNA as their hereditary material, a number of viruses use RNA, DNA’s close chemical cousin. But RNA is difficult to manipulate, so researchers working on coronaviruses, which are RNA-based, will first convert the RNA genome to DNA. They manipulate the DNA version, whether by adding or altering genes, and then arrange for the manipulated DNA genome to be converted back into infectious RNA.

> Only a certain number of these DNA backbones have been described in the scientific literature. Anyone manipulating the SARS2 virus “would probably” have used one of these known backbones, the Andersen group writes, and since SARS2 is not derived from any of them, therefore it was not manipulated. But the argument is conspicuously inconclusive. DNA backbones are quite easy to make, so it’s obviously possible that SARS2 was manipulated using an unpublished DNA backbone.

> And that’s it. These are the two arguments made by the Andersen group in support of their declaration that the SARS2 virus was clearly not manipulated. And this conclusion, grounded in nothing but two inconclusive speculations, convinced the world’s press that SARS2 could not have escaped from a lab.

[1] https://www.nature.com/articles/s41591-020-0820-9

[2] https://thebulletin.org/2021/05/the-origin-of-covid-did-peop...


1) A letter in Nature is not an opinion piece - it's a peer reviewed short article.

"Letter

A Letter reports an important novel research result, but is less substantial than an Article. Letters typically occupy four printed journal pages. This format begins with an introductory paragraph (not abstract) of 150 words maximum, summarizing the background, rationale, main results and implications. This paragraph should be referenced, as in Nature style, and should be considered part of the main text, so that any subsequent introductory material avoids too much repetition of the introductory paragraph. The text is limited to 2000 words, excluding the introductory paragraph, Methods, references and figure legends. As a guideline, Letters allow up to 30 references. Letters should have no more than 3–5 display items (figures and/or tables). A Methods section is published online-only, immediately following the main text and figures. It should be written in such detail that experiments can be reproduced by others.

Letters include received/accepted dates and may be accompanied by supplementary information. Letters are peer reviewed."

https://www.nature.com/nmat/about/content

It doesn't take long to discover the above - so why did Wade fail to do the work to check what it was he was attacking?

2) "Since the SARS2 spike protein is not of this calculated best design, the Andersen paper says, therefore it can’t have been manipulated." What I read was that the SARS2 protein doesn't work in theory, because the theory is wrong (a bad approximation that is subject to intensive research world wide - protein dynamics are a big step beyond the art of protein structure prediction as I understand it.) It would be irrational for a team to attempt to build a SARS2 binding protein - essentially they would be shooting into the dark. The space of random search for this kind of structure isn't just huge - it's incomprehensible, consequently the chance of coming upon the SARS2 protein by chance is vanishingly small. If Chinese scientists did have the capability to do dynamic bindings calculations that would have found the SARS2 spike I would think that they would be employing them for a number of decisive military innovations - as well as staggering commercial gain. We know that the Russians capabilities to do hypersonic flow calculations because we see this in their torpedoes and ICBM's.... we would see similar evidence in China for this. We don't.

3) "With serial passage, each time the virus’s progeny are transferred to new cell cultures or animals" but this is addressed Anderson et-al; in an entire section of their article : "The acquisition of both the polybasic cleavage site and predicted O-linked glycans also argues against culture-based scenarios. New polybasic cleavage sites have been observed only after prolonged passage of low-pathogenicity avian influenza virus in vitro or in vivo17. Furthermore, a hypothetical generation of SARS-CoV-2 by cell culture or animal passage would have required prior isolation of a progenitor virus with very high genetic similarity, which has not been described. Subsequent generation of a polybasic cleavage site would have then required repeated passage in cell culture or animals with ACE2 receptors similar to those of humans, but such work has also not previously been described. Finally, the generation of the predicted O-linked glycans is also unlikely to have occurred due to cell-culture passage, as such features suggest the involvement of an immune system18."

Now - I count three arguments in that section of the article alone. Two of them are flatly ignored by Wade. It's almost as if he hasn't actually read Andersen's work.


Look at the Andersen letter on Nature - it’s technically classified as “correspondence”, not a “letter”. So the relevant quote from your source is:

> The Correspondence section provides a forum for comment on issues relevant to the journal’s community. This format may not be used for presentation of research data or analysis. A Correspondence should not exceed more than two printed pages and can range from 300-800 words; it is limited to one display item and up to 10 references. Article titles are omitted from the reference list. Correspondence may be peer-reviewed at the editors’ discretion.

Given that, I don’t think Wade’s characterization is dishonest.

It’s funny that you’re accusing Wade of not reading Andersen et al’s work, because it reads like you didn’t read his work - or even the excerpt that I posted!

For instance, take this notion that SARS-CoV-2’s spike protein doesn’t “make sense” or that “the theory is wrong” and can’t explain it. First of all, that’s not what Andersen et al actually says at any point. It really does just say:

> [while] SARS-CoV-2 may bind human ACE2 with high affinity, computational analyses predict that the interaction is not ideal and that the RBD sequence is different from those shown in SARS-CoV to be optimal for receptor binding. Thus, the high-affinity binding of the SARS-CoV-2 spike protein to human ACE2 is most likely the result of natural selection on a human or human-like ACE2 that permits another optimal binding solution to arise

That is to say, accusing Wade of not reading the work he’s criticizing because he doesn’t address an argument made elsewhere (where?) is unfair at best.

That said, even if Andersen et al were saying what you’re saying they did, Wade clearly accounts for this in the very excerpt I posted: he claims that GoF researchers simply don’t design proteins like this. Serial passage as a mechanism in particular doesn’t seem to require some fantasy of Chinese scientists expertly constructing some bizarro inexplicably dangerous spike protein by hand.

I can’t defend Wade’s failure to connect these dots himself, but all of the other claims in the letter are similarly addressed explicitly or implicitly. Humanized mice, discussed in the article, have immune systems; if serial passage were conducted in them it wouldn’t be surprising if it looks like an immune system were indeed involved. And on the flip side, the polybasic furin cleavage site, which Andersen et al claim as evidence that the virus must be natural is actually one of the most damning pieces of evidence for manual manipulation: it’s well understood that this could make a virus more easily infect humans, that scientists know how to artificially add them, and its particular construction in SARS-CoV-2 (as discussed by Wade in great detail) looks very artificial.

Putting that together: WIV scientists deliberately adding the furin cleavage site to some bat coronavirus, possibly (though not necessarily!) RaTG13, to help it jump species and then conducting serial passage in humanized mice is a straightforward and plausible origin story for SARS-CoV-2, in line with the sort of work we know WIV was doing, that accounts for Andersen et al’s concerns completely.


If SARS-COV2 has the ability to evolve really quickly, we have little chance to defeat it with vaccines and natural immunity. Cross fingers for lab-made virus.


There's also the possibility that the leak was from people or activities associated with the lab but not from inside the lab. For example, they hire some local people to go and fetch some more bats from the bat caves in another province. Those people drive to the other province in their white van, go into the caves, inhale lots of guana, grab some bats, drive back to the Wuhan lab, hand over the bats, then drive into central Wuhan to get a coffee and see if there are any good offers at the wet market. (OK, they probably wouldn't actually be infectious straight afterwards, but they're local people so they might visit the market next week, too.)


Gain Of Function


Can someone explain in non charged terms why its 'bad' to investigate and or ask the right questions regarding whether or not the virus was leaked from the Wuhan lab? Im genuinely curious here. Thinking hypothetically here, if it were leaked wouldnt we all want to do a post mortem and figure out how to prevent it from happening again?


In isolation, there's nothing "bad" about it. And we don't have enough proof to say for sure it was nor that is was not a lab leak.

That being said, there are a lot of confounding issues. Mostly political in nature.

First, the vast majority of people who insisted on the lab leak theory did it to deflect blame and target China as a scapegoat. And many trotted out terrible and conspiratorial reasonings for why the accidental lab leak theory was the "truth," many going to the point of it being an intentional leak and that it was designed in the lab by humans. Not to mention using these claims to suck up attention away from other things like actually handling the pandemic. And to pile on politically a China=bad narrative. So by association there's been a severe reluctance to add more ammo to this group's claims.

Secondly, history and the nature of the spread put the chances more on the side of a zoological vector given the information we have now. Obviously this isn't 100% proven yet, but so far most are hedging on historical priors. Especially considering the conditions of farming and the fur industry that exists in China. So the majority of the community side against the lab leak as the most likely option.

Of course, many scientists still leave open the option that it was a lab leak. We don't have enough information to completely be sure. And there's some odd circumstantial evidence that may point to a lab leak somehow. Including that China hasn't been the most forthcoming.

Still, it's very much a minority opinion in the field at this time and many people insisting it "must be investigated" seem to be doing it for political reasons as cover for other purposes.

Here's from Forbes an opinion piece about the current evidence we have so far about the origins and possible explanations. https://www.forbes.com/sites/startswithabang/2021/06/11/ask-...


> First, the vast majority of people who insisted on the lab leak theory did it to deflect blame and target China as a scapegoat.

If China did have a lab that leaked the virus, they _are_ to blame. To say that we shouldn't hold their feet to the fire if this is the case, well, that's a fine political opinion you can have. It may or may not be prudent.

The essence of the argument why we shouldn't discuss the lab leak hypothesis is "people's feelings". In other words, feelings are more important than what is true.

Truth should be the highest priority, damn whoever's political interests it will help. It is so sad that thinking of truth as too dangerous is part of today's milieu.


> If China did have a lab that leaked the virus, they _are_ to blame.

I think you’re misunderstanding the bit you are quoting.

Of course China is to blame if they had a lab leak.

The comment is instead making the point that most of those who are blaming China are not doing it motivated from a reasonable belief that there was a lab leak. Rather they are motivated by the opportunity to use China as a political tool to avoid blame for their own failures in dealing with the pandemic.


Exactly. In 2020, I didn't care if started with wild bats, bat soup, a lab leak, or Santa Claus. I cared about:

* Waiting a week after patient 1 to close the borders

* Intentional efforts to suppress testing

* "Covid won't happen here because we closed the borders" (a month into exponential covid case growth in the US)

* "...but if it does, it's barely worse than the flu"

* "...but even if it is, hydroxychloroquine is a miracle cure."

* "...but even if it isn't, we shouldn't lock down because it won't stop the spread"

* "...and even if we do, a silent first wave means we're all immune now that the first wave is slightly trending downwards and we should do a full reopen"

* Anti-mask

* Anti-vax

and more. Those fights had actual public health impact. "Whodunnit" had 0x the public health importance and 10x the flamewar potential, which is saying something, because we had plenty of flamewars as it was. Steering the conversation away from lab-leak steered the conversation towards things that mattered.


See, this is the real problem - it's not just the lab leak theory, the efforts to get Trump out of office seeped into and warped every aspect of the media coverage of Covid-19.

For example, border closures. Putting aside the fact that at the time the entire mainstream establishment insisted that imposing them at all was dangerous, counter-productive xenophobia, the US had the only remotely sensible early border closures in the Western world - and that was an infinitely bigger problem than whether Trump should've imposed it a week earlier. In particular, Italy massively dropped the ball and ended up with a huge outbreak spreading infections to the US and the rest of Europe whilst somehow reporting zero cases. (Even US testing wasn't that broken!) There is approximately zero chance that the US could've banned travel from them in time to stop this - there was absolutely no justification for this at the time, given they were reporting zero cases unlike the USA.

Then the American media pointed to the fact that Italy had banned direct flights from China (much too late) as proof travel bans didn't work. Of course it didn't - Italy has borderless travel with the rest of the EU, everyone could just fly in to a different airport, it's the equivalent of Texas or California banning direct flights in a futile attempt to keep the virus out. The US took the more sensible approach of restricting based on where people had travelled recently, regardless of where they were travelling from - pretty much everyone else now seems to have copied this approach.

The media also seems to have misled everyone about what went wrong with Covid testing in the US. As far as I can tell, the USA had the earliest, most aggressive attempted rollout of testing out of all the countries in the West at least, maybe in the world. There certainly wasn't any lack of enthusiasm for it from the top-level, politically appointed levels of the government. The problem was the non-partisan career parts of the CDC screwed up, first by contaminating the testing reagents and then covering it up and letting them ship out to labs anyway, causing confusion and delays as the labs couldn't work out why they failed quality checks.


> the entire mainstream establishment insisted that imposing them at all was dangerous, counter-productive xenophobia

Closing the borders before patient 1 or almost immediately after patient 1 (plus aggressive contact tracing) would have been good public health policy. Closing the borders after a week of exponential growth and lack of aggressive contact tracing was hopeless. Good for appearances only -- and the good appearances came largely from xenophobia because the public health cat was well out of the bag by that point. See the difference?

I'm sure you can find plenty of bad liberal media takes on the issue, but that's completely beside the point as they were not in charge of anything. The bad (xenophobic) conservative takes didn't just come from the media, though, they also came from the president. Repeatedly and persistently.

> As far as I can tell, the USA had the earliest, most aggressive attempted rollout of testing out of all the countries in the West at least, maybe in the world. There certainly wasn't any lack of enthusiasm for it from the top-level

Just one tiny little problem with that narrative: Trump said the quiet parts out loud, multiple times, confirming what would otherwise have "just" been rumors and leaks. He didn't just fight and stall the testing, he publicly bragged about it later.

"When you do testing to that extent you're going to find more people, you're going to find cases. So I said to my people, 'Slow the testing down, please.' They test and they test. We got tests for people who don't know what's going on."


The US did have contact tracing early on though, and as far as anyone can tell it did work pretty well at containing the cases coming in from China - maybe not well enough that it could've contained them indefinitely, though that'd be a tall order and we'll never know because this wasn't even the problem. Genetic tracing shows that cases in the US were driven by spread from Europe, almost certainly Italy given the circumstances, which no-one was really equipped to spot. The media just downplayed and omitted the contact tracing that happened in the US because it didn't fit the anti-Trump narrative.

Now, of course Taiwan had a lot of success until recently and they did ban travel from China earlier than anyone else - but again, the role of this was almost entirely omitted from the early US news coverage because it didn't fit into the anti-Trump narrative. Their success was attributed to their Covid testing and tied into to the story that this was something Trump screwed up due to his focus on border closures and travel bans. (Meanwhile in the real world, their Covid testing basically collapsed the moment the disease got a foothold - in May 2021 when this had become a mass-produced commodity.) They also didn't have the level of travel from Italy that the US and other worse-affected countries did...


In 2021 I care about:

* we only have to lockdown for two weeks to flatten the curve

* ok, two more weeks and then we can reopen

* well, we can't reopen, but we'll have vaccines soon so we'll be able to reopen

* ok, we vaccinated 70% of people so we can reopen now

* Vaccines work!

* Well, they don't work in that country because those are the worse vaccines

* Israel and UK having another surge? Oh it's only amongst unvaccinated people

* Uh oh, Delta Plus is coming, better stay home!


Chinese vaccines do work. It's bad reporting that says it doesn't. In those countries they did not reach the percentage needed for herd immunity with less effective vaccines.

They were still hugely protective against severe disease. So they work.


Did it actually steer toward things that mattered though?

I think politicizing rational inquiry, especially when China did a lot to help the virus leave its borders, was equivalent to trying to deflect, and just added more obfuscation to a meaningful dialogue about what we should do and what we should learn.


The inquiry wasn't political until Trump made it political...as a tool to distract from his ongoing desire to ignore the pandemic as an issue.

In 2020 the questions people wanted answers to were "what was the government doing" and "when was relief coming" and "we need masks and ventilators are you going to distribute them". The only people who seemed to think the answer to all those questions was "well firstly we need to consider if this is China's fault..." was the White House.


It wasn't just the White House though. The whole reason there is this resurgence of the issue 18 months after the fact is that all of the people asking the question who weren't Donald Trump crazy, were treated like they were.

I genuinely worry about all the people that believed it was a conspiracy theory, and still think they are on team science. They aren't.


It is a conspiracy theory, because there's no evidence beyond allegations of conspiracy that this is what happened.

It keeps being asked for the same reason that 9/11 truthers came into existence: because the idea that bad things can happen randomly to good people is a more scary idea then the one that bad things happen because someone planned for them to.

"It escaped from a lab" is an appealing idea because the very next conclusion will be "there should be no more virus labs!". Zoological origins, like SARS, or Swine Flu before it, offers no solutions - it's an ongoing problem.


I still don't care how it started. Until it's gone, the world needs to spend their cycles on getting past it. There will be time to point fingers and blame later.

It's like being in the middle of a house fire, looking for a way past the burning hallway to the door, and then someone else in there with you arguing "Don't worry about how to get out. What's really important is who started the fire!"


The Chinese dictatorship initially protested against countries closing their borders, calling it racist.


because closing one country's border doesn't work. Strict screening travellers do. While there were indeed recorded imported Chinese cases in west coast, US's epidemic mostly started off the east coast.


You have to do both, and this is clear in hindsight because of the challenges involved in setting up effective screening.

Eg, close border until effective screening is in place


> While there were indeed recorded imported Chinese cases in west coast, US's epidemic mostly started off the east coast.

This seems like a distinction without a difference since both coasts got the virus ultimately from the same country.


No it wasn't. The Wuhan strain pretty much died in last April.


> because closing one country's border doesn't work

Worked very well for Taiwan, Australia.



They were mostly unaffected for a whole year, things got bad only recently.


Yeah nah it works.


It still seems a bit silly not to investigate this fully.

After 9/11 there was a failure in airplane protocol to not have bolted pilot doors and to not aggressively fight hijackers. I wouldn't say investigating Saudi Arabia should have been avoided - even if there had been voices at the TSA who wanted to distract from their own failures.


IIRC TSA was assembled because of 9/11. There was no TSA that failed back then since it didn't exist.


People often forget how dramatically things changed in the years after the attack.

Or I suppose some people just weren't alive to witness the changes! It was a long time ago, bizarrely enough. It feels recent. Perhaps in part because it's still so relevant.


You are perhaps better off asking a different question:

Not, “was it a lab leak?”

Rather: if proven it was a lab leak, what would the remediation be?

Would it be a) for tightening of biosecurity controls, b) toughening of wild animal trade, or c) war with China.

We will get a) and b) without knowing where it came from; as prudent steps to prevent this from happening again; they are already happening.

Perhaps we can avoid c) if we never “really know”.

That would be nice.


Why do you think "war with China" is a potential outcome of determining it was a lab leak?

This is not a strong argument.

Regardless of all these wild pontifications, those who have run interference on the truth need to suffer the reputational consequences.


Don’t be naive.

Having a immediate target that is clearly to blame and already an “enemy” isn't going to just result in a ideological slap on the wrist.

What consequences do you think there should be?

Pay for the damage to the US economy? To the world? Apologise and it’s fine?

What do think “holding them to account for what happened” actually means?

This isn’t some scientific journal where you lose magical reputation points.

There's already literally a response two comments down saying you would need to force change to the CCP. How do you imagine that's going to happen? Ask nicely? Sanctions? Well, that's worked just great so far.

Let's see, oh I can think of another way of forcing change... what could it be?


I'd much rather have China admit fault and explain how this won't happen in the future than the current situation. As it stands I assume they are hiding something. For all I know they're developing bioweapons they plan to use for military purposes. And if they have nothing to hide then they have nothing to apologize for, but as it stands nobody is allowed to investigate so I have little faith in this theory.

I'm not pretending this isn't a political clusterfuck. But I'd rather deal with a political clusterfuck than a bioweapon clusterfuck. And if they aren't developing bioweapons then great! If they are developing bioweapons then that feels like something that's better to know sooner rather than later. And if there wasn't a lab leak then even better! Now the world knows that it really was just a bizarre phenomenon. If there was a lab leak then they simply made a mistake, they can rectify that mistake moving forward, and the world moves on. If the world doesn't move on - what are they going to do? You think the US (or any country) will go to war (as in send in troops in huge numbers with the understanding most of them will likely die) with China because of an accidental lab leak? I don't.

It seems to me the dumbest possible thing to do is not investigate. I don't believe advocating for ignorance is ever a viable strategy.


Russia literally shot down a civilian airliner, annexed part of the Ukraine, and continues to assassinate/attempt to assassinate former intelligence operatives that turned on them decades ago on foreign soil.

We still haven’t gone to war with them, and we’re in a better position to do that as well.

Declaring war on China even if this was a lab leak, hell even if it was on purpose (Difficult to believe, but let’s go there) isn’t a workable or appropriate solution. Certainly not going to happen in the short term, blame it on globalism, but the global implications are bigger than ever and don’t make it practical.


It's naive to assume that the US would enter into a hot war with China, or that war is the only way countries oppose one another. The most obvious way to 'punish' an uncooperative CCP would be through trade sanctions. If the Chinese government is responsible and the G7 had any interest in coordinating a response, this would put enormous pressure on the CCP, which is dependent on a rising standard of living for its citizenry. Other possible responses would include strengthening China's regional competitors (e.g., India). At a minimum, it could mean the cessation of global research collaboration.


More than a bit silly. It should be investigated fully. It’s a shame so much time has passed already.

Did something in my comment sound like I didn’t favor investigating? That was not my intention. The origin including lab leak should be investigated.


Let’s for a second assume not only that it was a lab leak, but that it was on purpose, what do you propose the response be?


If they intentionally let out something that killed millions of people then it should be met with extremely hard sanctions or more to force change at the CCP.

If you let a country intentionally kills hundreds of thousands of people and enact no penalty they will only escalate.

Still - I'd say the chance it was intentional to be less than 1/1000. Chance it was by accident - and that they covered it up - to be fairly high.


I don’t think anyone disputes that they covered up the severity, that was clear in real-time.

The question is if this was an intentional lab leak as is being suggested, I’m curious to know what people expect to happen.

As you pointed out this has killed millions of people, seems like people are angling for a war.

That outcome is why the accusation that this is intentional is a very very serious accusation and not one that should be tossed around by a bunch of half cocked internet sleuths (not saying you are one, just in general).


If it were intentionally released, they'd have planted it at the CDC or somewhere else that studies coronaviruses so they wouldn't be the obvious ground zero. China intentionally releasing a virus in Wuhan makes no sense.


Totally agree, all this hullabaloo and these arm chair virologists remind me of this scene from the Simpsons https://youtu.be/BNpmJVa10PU


If every country in the world, who was affected, learned this, I assume there would be very appropriate discussions within the leadership of them all. Talking about this, and worldwide agreement to prevent it from happening again, would be a fantastic response.

If it was intentional, then they're incompetent. I don't believe they're incompetent.


Isn’t this the problem? China knows there will be consequences if it was “China” who did it? Obviously a major ego bruising.

Who cares who did it, naturally it will be more evidence that communist dictatorships aren’t the best way to run things, but they’re never going to share the truth if that means a flogging.


I'd think the biggest consequence would be that another virus is released or mutates that isn't china specific, and the governments are just as unprepared as they were in 2019, since they fixed the lab leak problem instead of the being prepared problem


You mean it would just be more evidence that communist republics aren't the best way to run things for America. China seems to be doing fine.


Absolutely, no freedom of speech to say otherwise!


So if a restaurant worker in California happens to do a poor job of washing their hands and a diner gets sick, does that mean America is to blame?

There should absolutely be as deep as possible an investigation into the origins of the virus, but it needs to be dispassionate in all directions.


> a restaurant worker in California happens to do a poor job of washing their hands and a diner gets sick

If that worker causes a global pandemic the U.S. government covers up, yes.


Exactly this.

The cover up by is the problem


There is a difference between a restaurant worker (or a wet market worker) who slipped up and a lab worker that slipped up because we want lab rules to be idiot proof such that one worker would not be able to infect others/themselves - even if they tried.

The restaurant worker slipping up is bad luck if they happen to be first to contact a virus. The government that runs labs know there is 100% chance there are dangerous viruses there and have a responsibility to enforce the safeguards.


I think that only applies within their borders.

Once it's outside, sure, there's a duty to report, but other governments have a responsibility to their own populace to keep them healthy.

The US, for instance, should have more than enough spies in China to know everything china knows anyways, and took the chinese line that the virus didn't exist, or wasn't a problem up until Joe Biden got elected


The US spy networks in China have been "rolled up"[1]. They don't exist in a usable form (if the news is to be believed).

As for the "until Joe Biden" bit, er ... no. Trump was kicked out in large part due to his incompetent handling of the virus in the US (he thought it was an orchestrated attack by his political opponents, given that they turned everything into such an attack).

The virus was a problem long before Biden won. Not that he is more competently handling it (he isn't), but the news media can now largely let go of their Trump derangement to start focusing on important things again. So it shows up more.

[1] https://www.express.co.uk/news/world/905779/CIA-China-Jerry-...


Wikipedia:

> The Wuhan Institute of Virology, Chinese Academy of Sciences is a research institute on virology administered by the Chinese Academy of Sciences (CAS), which reports to the State Council of the People's Republic of China.

It would be reasonable by most people's definitions to blame whoever has oversight over a virology lab that leaked a virus. In this (alleged) case, that's the Chinese government.


The US outsourced virus research to this lab. The US will share some blame, because gain-of-function research is stupid in the first place.

Is this part of the misdirection? Both sides do not want to know. Or let's say powerful interests on both sides.


The chinese government doesnt owe me anything though. Sure, it's bad that they killed a bunch of their citizens, but they do that all the time


Yes. If the restaurant had a history of documented safety issues and the relevant regulatory government bodies didn't take action to rectify it.

https://www.washingtonpost.com/opinions/2020/04/14/state-dep...

https://www.businessinsider.com/us-officials-raised-alarms-a...

Btw, comparing a restaurant worker being sloppy and a supposedly BSL-4 lab functioning at the level of BSL-2 lab is not a good look.

Also, China's govt. has much much more control over a govt. lab than US has over a restaurant in California.

The analogy fails.


The US has complete control over a restaurant in California. Its got a huge military and could nuke the place if it wanted to.

Deciding not to is the same in both cases


> The US has complete control over a restaurant in California

No, it doesn't.

> Its got a huge military and could nuke the place if it wanted to

By this logic, the US govt. has control over every corner of earth.

Also, was the US govt. running the place and ignoring safety warnings?

Was the restaurant possible responsible for a global pandemic?

The analogy is stupid and not worth discussing more.

All I am getting from this is that people think a restaurant I n US has the same level of responsibility as the lab in Wuhan.


Well the Truth is WMDs didn't exist.

This is the post truth world.

And in the post truth world, the 6 inch chimp brain under assault of an info tsunami it has no capacity to fully grok, has only one choice - to escape reality, deny responsibility, judge, blame and demand that an imaginary entities descend from the heavens to clean up the mess.

Guess what chimp troupe? It's not going to happen. Now get back to work.


> This is the post truth world.

Let's fight with our greatest might to make this a post-post-truth world.


I wouldn't consider china to be responsible for everyone else's shit response though.

Those responses are way more interesting, too. Taking another 20% chance off of a lab leak happening again doesn't fix that the US government will pretend a virus doesn't exist while it's killing people


> Truth should be the highest priority

This was the ideal for the Enlightenment, because the truth is good and from God. However we now live in the postmodern philosophy were truth is merely a political instrument and has no longer a holy status


If truth is unknowable next best thing to care about are feelings.

And you pretty much can't disprove lab leak idea at this point because there can't exist any sufficient evidence against it to convince people who believe in it.

Even if you just personally let them inside the lab and gave them access to all documents the only thing they would find would be next suspicious clues regardless of what would actually happened. And even if there was very little they managed to find suspicious they'd say it's because evidence was removed and they are being lied to.


I think I see where you're going here, but it's dangerously ambiguous.

People will believe feelings if they can't figure out the truth, sure, but that doesn't mean we have to tolerate fantasy over fact, and we shouldn't allow those people to make policy decisions. I mean, clearly we HAVE, but we shouldn't.


> If truth is unknowable next best thing to care about are feelings.

The truth became unknowable due to feelings.


Truth in this case is unknowable because absence of evidence is not evidence of absence. And what we have after more than a year of people wondering about this idea is just absence of evidence.


In Science, one year is nothing. It will become knowable with international pressure. Giving up midway is not the solution.


Midway to what? If there was any conclusive evidence that they had a sample of covid or its ancestor in that lab before late 2019 it could have been destroyed without a trace right after.

You'll be always left with nothing more than accusations that can't be disproven (or proven).

The only thing that might put this thing to rest is further research on coronaviruses in animals and humans especially the ones that spread asympthomatically which are way harder to even find. And maybe some day we'll discover some ancestor of covid somewhere.

But it still won't put the lab leak hypothesis to rest if it's found in bats. Only if ancestor of covid is actually human coronavirus (other then the ones we discovered so far because they cause symptoms of common cold) and is detected in historical tissue samples from humans from before 2019 then maybe most people will rule out lab leak.

Meanwhile get ready for decades of blaming China for the pandemic.


Sounds like they are succeeding in their intent then.


> First, the vast majority of people who insisted on the lab leak theory did it to deflect blame and target China as a scapegoat. And many trotted out terrible and conspiratorial reasonings for why the accidental lab leak theory was the "truth," many going to the point of it being an intentional leak and that it was designed in the lab by humans. Not to mention using these claims to suck up attention away from other things like actually handling the pandemic. And to pile on politically a China=bad narrative. So by association there's been a severe reluctance to add more ammo to this group's claims.

How does not investigating help with those theories? There is a lab in Wuhan, they were working with coronaviruses, the infections seems to have started there, so logically someone points a finger... and the answer is "we won't investigate, because people are pointing fingers!"?


People expect a positive investigation result. Asking yourself, what kind of evidence would be "enough" to say it is not a lab leak? This is not obvious. Any negative result would beg deeper questions on trustworthiness of the given data, thoroughness of the research in this manner etc.

No negative investigation result is acceptable to the public IMHO.


Even if it were true that "the public" would not accept an acquittal at trial (although they sure were quick to accept acquittal without a trial), what does that have to do with scientific investigation? If there were reasonable candidate ancestors for SARS-COV2 found in nature, it would support natural origin, and be "enough" for many current skeptics. The weight of evidence is currently in support of lab leak, regardless of opinion one way or the other.


> First, the vast majority of people who insisted on the lab leak theory did it to deflect blame and target China as a scapegoat

I don't think this describes a lot of people. On the contrary, this seems to be an assumption by people who seem to not want to discover the nature/cause of the virus. It's possible to want to "handle" the virus properly at home while also wanting to know what caused it, and that always seemed to me the predominant attitude among those who were open to the lab-leak idea.


The lab leak was a valid hypothesis since early 2020 and credible scientists had been warning about the possibility of a leak, specifically from the Wuhan Institute of Virology, well before that. By April, there were long arguments with evidence being published, such as here https://yurideigin.medium.com/lab-made-cov2-genealogy-throug.... These were not "China==bad" arguments. Just people willing to look at the facts. If anything, they were "gain-of-function research==bad" but the Obama administration had put the kibosh on funding GoF research in the US for similar concerns, so surely that was acceptable criticism. When Trump took office, it appears that Fauci took advantage of the chaotic transition period to quietly lift those prohibitions.

Furthermore, there is plenty of evidence to support that the virus was in fact "designed in the lab by humans" so not sure why you're lumping that in with "conspiratorial reasoning".

Meanwhile, there was what looks like an actual conspiracy by prominent scientists led by Peter Daszak to mislead the public about the possible origins of the virus. These scientists intentionally, collectively, misled the public and hid their obvious conflicts of interests. Wouldn't that qualify as a conspiracy?

History and the nature of the spread did not support a zoological origin of the virus. The likelihood of zoological vectors is an over-stated fever dream of gain-of-function grant seekers. If anything, the fact that ground zero for the virus was on the doorstep of the Wuhan Institute of Virology where the research specialty is bat coronaviruses suggests the null hypothesis is lab-leak. Zoonotic spread was a hypothesis that favored the actors likely responsible for the accident.

The evidence that the virus escaped a lab is not merely circumstantial and certainly not merely that China is, er, not forthcoming. The principal evidence is in the structure of the virus itself. There are details of the virus spike protein that appear likely to have been created in a lab using a bat coronavirus as a base.

The "debate" has been highly politicized, all right. But the politics has been mostly on the side pushing for a natural origin. Would it suprise you if CCP propagandists were involved in promoting the theory that points the blame anywhere but at the government of China, perhaps pushing the narrative that anyone who says otherwise is, wait for it, racist? Given how punishing the Chinese government can be to those who are perceived to oppose Chinese interests, and the many conflicts of interest vis a vis China and the Chinese market that exist in our government and science research industry, is it surprising that the narrative pushed by corporate media would relentlessly promote zoonotic and demote lab-leak?

Assuming the virus did, in fact, come from a lab -- one that had been cited for lacking sufficient safety protocols and training for the research conducted there -- it's certainly reasonable to want to investigate and ensure it doesn't happen again. Who would that be "deflecting blame" from? And "scapegoat" implies that China wasn't to blame. If the virus originated from a government lab in Wuhan, then they are to blame.

An opinion piece in Forbes by an astrophysicist on evolutionary microbiology is worth not much in my book. Despite looking really hard, we haven't found the missing link in nature that would support an evolutionary explanation for the odd protein sequences. Gain-of-function is the simpler explanation. Meanwhile, the CCP is apparently engaged in a cover-up now, putting out agitprop about bat-bites and other smokescreens. Why would they do that, do you think?

I'm not even going to go into all the circumstantial evidence that connects our major GoF researchers and money to the Wuhan lab. That would take another long post.


The conspiracy theory is that it might not necessarily lead to governments, but US tech giants like google paying for GOF research, while simultaneously censoring public dialog on social media.


Deflect blame from what?


I don’t think Richard Ebright is demanding an investigation for political reasons. He refers to Trump as a sociopath.


> did it to deflect blame and target China as a scapegoat.

I don't see how that works. The US funded some of the research in Wuhan and it was done in collaboration with US scientists. If the lab leak hypothesis is true both the USA and China could share the blame.


That's more of a recent development in my reckoning.

The original form was almost purely China=bad. Then it has morphed to include some of the US scientists as more information came out.

But specifically most (in the conspiracy group) are trying to tie it specifically to Dr Fauci who became a lightning rod for controversy and political attacks during the pandemic as he became the face of the government's response. Thus it's not all US scientists. Just the ones some don't like politically and who are "in bed with China."

And furthermore, sure the US may have funded some of it, but at the end of the day China is the one who goofed.

Of course, I'm speculating a lot and there are a lot of variations that I've seen for support for the lab leak theory. Just trying to summarize some of the hotter takes I've seen.


More specifically, china is the location where somebody goofed.

Sometimes it's in the US, sometimes, it's somewhere else. The goofing is guaranteed, unless you pay somebody to goof on your behalf


It’s scientists that fund or support gain of function research at WIV. So anyone involved with Ecohealth is fair game.

I don’t see anything political here. If Fauci and Daszak had come out against dangerous experiments at low biosafety levels we wouldn’t be talking about them.


Some/many people can't separate the accusation from it being shown to be true. During that period of time (years??), it's a distraction for those people from the other problems like handling vaccine distribution, relations with China independent of COVID19, etc...

Yes, if this were a narrow academic research project looking into the origin that was left de-politicized until there was an outcome that would be great. Unfortunately this whole thing was born political and China hasn't done itself any favors by always being so hush hush.


It isn't bad to investigate or ask questions; the problem is that many of the people who are vocal proponents of the lab-leak theory are making a motte and bailey argument that takes the form of "the virus escaped from a lab in China" as the motte and "China deliberately released the virus to hurt its enemies/Trump/etc" as the bailey. I don't have a strong opinion on the origin of the virus, but the idea that China released it deliberately is very stupid and where most of the lab-leak conversations I've followed end up.

It also doesn't help that China's current leadership is extremely allergic to anything that implicates China at all, so their actions are largely compatible with what you'd see in a coverup.


Motte and Bailey Definition: “ Motte and bailey (MAB) is a combination of bait-and-switch and equivocation in which someone switches between a "motte" (an easy-to-defend and often common-sense statement, such as "culture shapes our experiences") and a "bailey" (a hard-to-defend and more controversial statement, such as "cultural knowledge is just as valid as scientific knowledge") in order to defend a viewpoint. Someone will argue the easy-to-defend position (motte) temporarily, to ward off critics, while the less-defensible position (bailey) remains the desired belief, yet is never actually defended.”

https://rationalwiki.org/wiki/Motte_and_bailey


If it leaked from the lab, preventing that is very easy. We just need to stop doing gain of function research.

Whether or not Covid came from a lab, it's at least plausible that it did, and a virus just as bad could get accidentally released in the future. So our options are:

- Continue gain of function research, and risk killing literally millions of people

- Stop gain of function research, and lose any knowledge we would gain from it.

Honestly, I don't know the first thing about gain of function research, but that's one hell of a risk we're taking with it. Can we maybe not try to make the viruses deadlier?


Is it a certainty that the lab was doing gain of function research? Haven't followed this closely.


There's no indication WIV was doing any gain of function research.

WIV did collaborate with UNC Chapel Hill to do GOF research in America, in mice using a SARS-CoV-1 backbone.

The US government send funds to WIV to study SADS-CoV in pigs.

Circular logic is invoked to "prove" that those funds led to secret GoF research which has never been published or talked about on the basis that the pandemic arising in Wuhan is too much of a coincidence (and coincidences logically can never happen).


I wrote a long post in reply to this, but HN lost it :( :(

I feel that people are over-simplifying this issue greatly on both sides in this thread. Basically, it seems like the definition of GoF is not totally agreed upon even by top scientists. A lot hinges on intent/expectations, but of course scientists can't perfectly predict what will happen with these experiments.

It seems like the research referenced was not "GoF" research in the sense that it wasn't intended or predicted to cause GoF. But at the same time, going back to even 2015, there was criticism that this research was risky, even if it technically was not GoF research.

Some scientists also seem to think we should be doing more GoF research to learn more before the next pandemic.

These are the links I read, both of which I thought were pretty even-handed. For the record, I often think fact checking sites present totally biased nonsense, but in this case it seemed okay.

https://www.factcheck.org/2021/05/the-wuhan-lab-and-the-gain...

Thread from an MIT researcher quoted in the article:

https://twitter.com/Ayjchan/status/1370880584936001541


You still don't get SARS-CoV-2 out of any of the experiments they were doing. The experiments that have been done on chimeric viruses have been using SARS-CoV-1 or the SARS-CoV-1-presumed-progentor WIV1. RaTG13 is still 30-40 years worth of evolution away from being a SARS-CoV-2 backbone and you can't get it from randomly bolting on different hACE2 binding proteins to a RaTG13 backbone. And while the pangolin spike is closest to SARS-CoV-2 it is still not a perfect match.

So they were creating chimeras from a spike they found that was similar to the pangolin spike but has never been published. And they were combining that with a backbone that they found that was RaTG13-like but similarly has never been published. Even though their prior targets have been SARS-CoV-1 and WIV1 backbones, and they skipped over RaTG13, which would have been of more interest to study because of its association with the miners, to select an RaTG13-like backone of an unpublished virus. And then presumably they did all this in HELA cell lines expressing human ACE2 and did serial passage / gain of function so it became well adapted.

Then even if you have all this happen, you somehow need to get that virus up someone's nose. Because petri dishes don't cough. And we know that SARS-CoV-2 doesn't spread pretty much at all from surfaces. And you need to get a sufficient infectious dose. So someone had a party in the lab and decided to chop up a dish of proto-SARS-CoV-2 cultures and rail a line of it like it was coke or something.

Or, nature does chimeric (recombination) gain of function experiments all the time, and every confined animal farm in China is a bioreactor in a lab doing stochastic serial passage experiments with "lab workers" who have never even heard of biosafety levels.

https://www.biorxiv.org/content/10.1101/2021.01.22.427830v3

https://www.cell.com/cell/pdf/S0092-8674(21)00709-1.pdf

https://www.nytimes.com/2021/06/14/science/covid-lab-leak-fa...

https://www.nytimes.com/2021/06/14/world/asia/china-covid-wu...

At least everyone seems to have stopped yapping about furin cleavage sites this time.


Your comment contradicts your previous comment.

> There's no indication WIV was doing any gain of function research.


No it doesn't.


https://mobile.twitter.com/R_H_Ebright/status/14052391280532...

> The work met--unequivocally--the definition of gain-of-function research of concern under the 2014 Pause.


This is not true.

https://twitter.com/r_h_ebright/status/1405239078698815489?s...

> The Wuhan lab constructed novel chimeric viruses that combined spike genes from new bat SARS-related coronaviruses with the genomic backbone of another bat SARS-related coronavirus.

> These were viruses that were novel, not viruses that were present in nature.

https://journals.plos.org/plospathogens/article?id=10.1371/j...


A rando on twitter is not a source, they're just citing the same circular reasons speculation as assertive truth and there's no proof.

And your citation is to:

> Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus

Yes. There is a massive amount that we still don't know about the genoomic diversity of sarbecoviruses in bats in and around China. This is the kind of study that we need a whole lot more of. No idea what your point is.


1) It's Richard Ebright who has been quoted in numerous articles. He isn't some "rando on twitter." You didn't read his sub-tweets.

2) You only read the title of the article I linked that was in sub-tweets. See the following tweet:

https://mobile.twitter.com/R_H_Ebright/status/14052391926286...

> The construction of novel chimeric SARS-related coronaviruses able to infect human cells and lab animals at WIV (1) was published with acknowledgment to NIH grant AI110964 (https://journals.plos.org/plospathogens/article?id=10.1371/j...) and (2) was reported to NIH under NIH grant AI110964 (https://reporter.nih.gov/search/0dVX_GElSEGDOsNMZq7qaQ/proje...)

So, yes, gain of function research was happening at WIV.


There's not gain of function. The WIV1 virus already binds to hACE2, putting another spike on it and finding that spike also binds to hACE2 in vitro doesn't enhance its function at all. It does tell you how much that spike binds to hACE2.

You can debate if that's a good idea or not, but SARS-CoV-2 is way too distant from WIV1/SARS-CoV-1 to arise from any lab experiment with chimeric viruses. And its also too far away from RaTG13, which still needs decades of evolution to turn into SARS-CoV-2.


https://mobile.twitter.com/R_H_Ebright/status/14052391280532...

> The work met--unequivocally--the definition of gain-of-function research of concern under the 2014 Pause.

> The work met--unequivocally--the definition of potential pandemic pathogen enhancement under the 2017 HHS Potential Pandemic Pathogen Control and Oversight (P3CO) Framework.


Dr Shi admitted they were studying to make viruses jump from one species to humans. That's "gain of function".


She states specifically that she was not doing GOF research into how to make viruses more virulent or jump species. You can study how viruses jump species without making them jump species.

And if you disagree with that, do you have details of the experiments and how they were seeking to enhance existing viruses which goes beyond just speculation and circular logic?


Her statements were:

> But in an email to the paper, Shi said her experiments differed from gain-of-function experiments since they did not seek to make a virus more dangerous. Instead they were trying to understand how the virus might jump across species.

They have already been caught lying about not having any bats in the lab and so far they haven't been acting like someone who's innocent.


I don't see how your quote disagrees with what the OP said.

It doesn't claim either that they had bats in the lab.


They had bats in the lab. Australian media did an expose on that.


I can't find that, please provide a source.



Does that actually solve the problem though? Just because one instance can be solved by stopping gain of research function doesn't mean all the people in old folks homes will be treated well enough that when a new virus comes along, they won't be guaranteed deathm


When I first heard the lab leak hypothesis around Feb or March 2020, it was entirely non-partisan and was being investigated by people who had no skin in the political game. At the same time, some other politically-motivated people were claiming that the virus was both a "democratic hoax", and a "bioweapon" made by China and deliberately released on their own people so that it could be blamed on the US and embarrass the US President. Now, those same politically motivated people are tying themselves to the lab leak theory, because none of their other nonsense panned out.

I'm surprised that people had forgotten this already. You don't hear much about a "democratic hoax" or a "bioweapon" nowadays, but those words were a part of the conversation a year ago.

Note that the phrase "politically motivated people" was substituted for the original term "whack jobs", which I think is more appropriate; however, your asked me to use "non charged terms", so I did my best.


This is a charged topic, but I'll try to answer objectively without trying to argue whether the reasons are good or bad.

I can think of two reasonable reasons why someone wouldn't want to investigate the matter:

1. It would be embarrassing for China.

2. It may be hard to properly communicate or convince people of the difference between an accidental lab leak vs. an intentional lab leak which could add fuel to a fire of jingoism/nationalism in other countries.

Again, I'm trying hard not to make a judgement here. Hopefully I did a decent job.


I'd add:

3. Experts who conduct or fund virology research don't want it to be true, because it would inevitably cause a massive clampdown on what research is allowed and how it is conducted. It would also cause lasting damage to the field's reputation and prestige. Eg. imagine being a nuclear researcher in the aftermath of Chernobyl.

4. People who have significant personal or business ties with China are concerned that a finding of culpability will result in escalating tariffs and other sanctions, damaging China's economy and potentially causing collateral damage for those who do business with Chinese firms.


Good additions. Thank you.


#2 is very real. I have friends who have been harassed in public because of their perceived race, which makes me very sick of the whole conversation. This idea got politically weaponized early in the pandemic, which also makes me suspicious of the benevolence of some of the people “just looking into it”.

There’s also a #3, that is that I’m irritated that people are becoming experts on virology after reading a Wikipedia article (or worse) and deciding to “look into” this, then declaring things to be damning evidence based on an extremely limited understanding of the subject matter.


Why don't you ask if it came from one of the two US labs that do the same kind of research? Especially since we know the virus was present, globally, months before the outbreak in Wuhan....


Pretty much every source agrees that Covid was first detected in Wuhan in December 2019. Do you have any proof that it was detected earlier?


We do?


It did not sound like "we" included the person I was replying to. :)


There are only 2 reasons I can think of:

1. Because Trump called for an investigation into the Lab Leak Theory. Since Trump is bad, everything he says and does is always bad. This meant that everyone who was anti-Trump said that the lab leak theory was 100% false, definitely a consipracy theory and hence.... bad.

2. Because the Chinese government have used the modern political environment to deflect all critism as racism. Because people often shorten "Chinese Government" to "China" in news (much like the US), they take it that attacks against "China" aren't really attacks against the country but instead racist attacks against the people. Since racism is bad, criticism of China is racism, and investigating the Lab Leak leak is criticism of China - it stans to reason that the Lab Leak theory is racism, and hence.... bad.


This sort of non-reasoning is all too common now in partisan news sources. They project opinions out to their viewers without any reasoning or supporting evidence. You've spotted a good example on the left. The right does it too with all sorts of racism and antifa nonsense. Oh and apparently the election was stolen. All around our political climate over the last 20 years has gotten progressively more insane and tribalistic.

Another poster in another thread once said that during the Bush and Obama years, safeguards against misleading the US public with counterintelligence ops were removed. I feel like that must have something to do with the explosive growth of the partisan-bullshit-drama-news business. The obvious factors in changing news media are the internet and social media, but I don't think that fully explains the widening divide and eager abandonment of objective reality.


This is exactly what happened in the late XIX century, when first mass media appeared, and did about the same: they'd cherry-pick evidence to support their prior opinions and painted the oposite side as villains.

Dreyfus affair was the highlight of that phoenomenon https://en.wikipedia.org/wiki/Dreyfus_affair

Unfortunately, same thing is happening with YouTube bloggers right now: I checked economists of 3 different kinds, and all of them would mostly pick the other's argument, exaggerate it to absurdity, then blame the opponent being socialist/social darwinist/nazi/anarchist/etc.

Most of audience enjoys simple confirmation of their views, and accepts whatever is put in its favor: pure theorizing, demagogic questions, anectdotal evidence and cherry-picked data. Many reject any evidence that puts their worldview under stress -- I personally had this moment with friends, who'd just claim "this is not important, X is always Y, and Y > Z."


Objective reality is sometimes painful, nuanced, and rarely has tidy solutions.

It is a poor vehicle for a narrative. Thus, it is weaponized by contorting it into half-truths that serve the important purpose of affirming pre-existing values.

The past year has made it extraordinarily clear that the epistemology of science is far too demanding for most people. And that’s okay; it just usually isn’t so starkly obvious.


The only 2 reasons you can think of start from the supposition that there is strong evidence pointing at "lab leak" as a sensible and sound place to invest enormous resources in trying to prove.

Is it? (the answer is no).

Because the other place that we actually do need to invest enormous resources in researching for viral origins is the wilds of China. Because if it's not a lab leak, then there's a carrier species out there as a reservoir and a series of transmission and exposure behaviors which made it's emergence more likely, and we really need to identify those as well as any potential future viruses which may emerge from the same reservoirs - as was predicted would happen after SARS (and then did, hence COVID-19).

Lab-leak proponents are basically UFO-believers at this point: constantly claiming we need more research into the lab leak, and dismissing any alternative explanations (hence why we're up to "China did secret, undetectable gain of function research at the Wuhan lab")


(1) is a big reason why hyper-polarizing cult of personality figures in positions of political power are categorically bad. Anything they say is mindlessly believed by their cult, and mindlessly disbelieved by their anti-cult.

Government, politics, and politicians are among those things that should be very boring. The mark of a good political leader is that you don't have to think about politics very much during their tenure. Interesting government was a major cause of death in the early 20th century.


Because Trump is incompetent anything he does will be done poorly.


It's not bad, tracing the cause is a fundamentally good thing. In fact, afaik, it's just procedure. But many reasonable people nowadays are reluctant to publicly entertain any ideas that can be politically weaponized, in this case to increase the anti-china sentiment.


> Can someone explain

Were one to entertain the possibility that a lab facility in China was the source of infection leading to a global pandemic then isolationists and nationalists and other persona non grata might imagine they've received some validation of their policies. Naturally this is intolerable. So intolerable, in fact, that you are obligated to employ however much cognitive dissonance you find necessary such that any suggestion of a lab leak becomes unthinkable. Obviously anyone that fails to do so is exhibiting faulty and dangerous thinking.


This is an extraordinary comment. To follow up, however, wouldn't suppressing talking about this stuff provide even more validation?


Of course. But we're dealing with ideology here, and ideologues rarely perform the sort of calculations you have in mind.


So, because of a few people, who already believe this has happened, you decide not to investigate (which reaffirms their beliefs), and possibly lie to all of your citizens, because a country might have accidentaly or intentionally killed many many people, and won't get sanctioned in any way because of that?


Yes. This is what makes those few people so dangerous. But for them we might safely pursue the necessary remedies. Unfortunately such a pursuit risks delivering vindication to said people, deserved or otherwise, and so we must demur.

All of this is self evident when you understand the correct prioritization of concerns. While discovering the true genesis of some great failure and correctly ascribing fault may have value, the risk of validating ones ideological opponents -- vanishing few and impotent as they may be -- has many times more import.


This, itself, is dangerous thinking.


Yes, this is literally the "ministry of truth" and thought policing in action.


I think virologists may have some incentive to discount the possibility of a lab leak. They seem to be the first to deny it is a possibility. This could be because they know what they are talking about. But at the same time, if a lab leak was proven, there would be repurcussions for all virology research. It would at the very least become much more heavily regulated. BSL4 research and facilities may get canned altogether.

At worse... virology would receive an indelible stain of epochal vitriol.


By the time Russia disclosed the Sverdlovsk incident, the Soviet Union didn’t exist. It’s only bad from the perspective of a specific government elite in China, and no one else.


It's not bad, it's just the reason people are doing it have nothing to do with preventing it form happening again.


There's nothing bad about it rhetorically, academically.

But from a populist perspective, it's really scary. Crime is up across the board 33% in the US due to various factors, populist anger is real and that's just 'regular covid stuff'. On the margins of the bell curve, people do really crazy things. Anti-Asian acts, ranging from a few simple harmful words on the street, to full on assault, have measurably increased this year. So you can see some of the impact of populism right in the numbers. With 600 000 dead Americans and 240 Million guns ... it's pretty scary to think of what might happen.

Geopolitically, it's a 'monster' thing, on the order of 9/11, invasion of a country etc.. Accident or not, if China 'caused' a massive worldwide decline and millions of deaths ... it's hard to imagine what the fallout would be.

If there were inexorable, clean, hard evidence ... then I can see 25% of the population demanding blood, i.e. 'war' as within the scope of retribution.

So the 'truth', the 'nuances', 'public communications' and 'goestrategic implictions' all form different aspects to thi answer.


it matters how a line of questioning starts.

same way it matters if police coerce a suspect to "confess".

tainting an inquisition that started with no factual observations is what has happened.


If found to be or not to be, it can be used for political ammo


Population control.

There's around 8 billion people on Earth. Most of the wealth on Earth is controlled by a small number of those people. What stops the other people from taking it from them? Answer: The illusion of power and control, via use of that wealth.

Historically, the best way to control people is to divide them...over and over. That's what we're seeing nowadays: via use of the mass media. You'll rarely see a major news story nowadays that doesn't pit large groups of humans against one another. Currently, the best "division" strategy is for them to use the media to promote left-wing thought.

Since a lab-leak doesn't align with the political aspect of Covid, they're doing everything they can to squash any discussion of it. Admitting they were wrong, or having discussion around the possibility of them being wrong, would bring the possibility of people waking the fuck up to the level of bullshit they're being fed.


Thanks, "Covid was NWO population control" is my new favorite crazy-person Covid theory.

It now beats the #2, "Covid isn't real but it was created by the Chinese government".

Wake up, Sheeple!


I didn't say covid is population control, I said the media is.

And if you lived in the 15th century you'd probably be the guy ridiculing anyone who said the Earth might not be flat. How dare those crazy people!


I'm sure in the 15th century, I'd be a lowly peasant, barely able to read and blissfully unaware of Earth's shape. I'm not royalty or something in this life.


Fauci’s NIAID institution directly sponsored coronavirus research in Wuhan lab suspected in the leak (via more than $800k in grants in 2015-2019).

They are probably as interested as Chinese government in downplaying the role of this lab in the Covid outbreak.


Because then it could truly be called “The China Virus”, and there are a lot of people that don’t want that to happen.


A lab leak theory doesn't necessitate that it's a chinese lab


Strawman. Nobody, even China, argues it's bad to investigate. Everyone just wants the investigation to be free from political interference.


"Dr. Goldstein noted that the testing paper listed the individual mutations the Wuhan researchers found in their tests. Although the full sequences are no longer in the archive, the key information has been public for over a year, he said."


Not to mention it was deleted in June 2020. I have to imagine many researchers had already downloaded the data by then and that there are a number of local copies that could be shared out if there was compelling reason to do so.

If it was a coverup it was a rather poor one. It’s hard for me to think this was nefarious, unless the intention was just to delay (in a plausibly deniable manner).


It isn't, by itself, conclusive at all, but the amount of smoke China generates around this whole thing, vs transparency, screams that there is fire in the middle of the smoke.


Is this amount of smoke uncharacteristic for China?


Establishing a pattern of shiftiness would not make the actions in question less questionnable.

If I hear a surprising claim from a pathological liar, I'm also less likely to believe it, not more!


True, but saying that doesn't actually give it weight. And they aren't making a claim here, they are denying an accusation. My saying "Hey, pathological liar, I think you're Santa" and them denying doesn't make it more likely they are Santa.


That's fair! I overstretched my analogy a little :)


No, but neither is fire


If SRA is like the closely related GEO database, then you can upload data without it being public yet. You frequently do so prior to publication (but give the reviewers special access) and then make it public later. So it may never have been publicly accessible.


Not sure why a direct quote from the article is getting so heavily downvoted. Maybe there’s something here, but if the variants were in the published paper, it doesn’t really matter if the raw sequences were yanked off of the SRA.


I don't see good enough evidence to show the zoological origin yet. I don't see good enough evidence of a lab leak origin yet either. I do see good enough evidence for a Chinese coverup. I can say for 100% certainly the Chinese are not being upfront with their data. What scenario would hiding data benefit? Cui bono?


They might just want to protect other secrets about the lab and keep everyone at arms length.

My bet is that even in China (which is not monolithic) different stakeholders are not so sure and there's major CYA between the scientists, the local managers, the Beijing-based leadership, senior leadership at all levels. Nothing good can come for any of these people if they allow the investigation to proceed smoothly. What if it's discovered that some totally unrelated incident happened years ago or that somebody was embezzling or did shady land deals with Wuhan lab accounts? The truth only helps people who are not involved. Everybody involved is best served by keeping their mouth shut and blocking any investigation.


When it's about the biggest event on the planet for at least a year, the highest central powers are surely in complete control.


Sorry but China is about as monolithic as you can get. The CCP had an incredibly tight control over the entire country. It doesn’t allow anything except for a monolithic view.


That’s not how China works. Source, my Wife is Chinese and her father is a retired CCP member.

Local officials are highly corrupt and also are terrified something they are responsible for will come to the attention of the central leadership in a bad way. Thus they will bodge things for personal gain against the policies of the central leadership, and will try to ensure the central leadership don’t hear about things they very much want to hear about.

This is a terribly high risk strategy, but it’s the only one that actually works. That’s the problem with corrupt bureaucracies.

Of course once central leadership is aware of a situation they can mobilise vast resources and have absolute power to impose whatever strategy they choose. Anything or anyone in the way gets flattened. This is now happening in Hong Kong.


I'm not sure how this statement from the parent:

> The CCP had an incredibly tight control over the entire country.

And your comment below really disagree with one another?

> Of course once central leadership is aware of a situation they can mobilise vast resources and have absolute power to impose whatever strategy they choose. Anything or anyone in the way gets flattened.

I'm totally ignorant on this matter but to my reading there seems to be more in common between your two viewpoints than not.


The point is there are different stakeholders with mutually incompatible interests in China. It’s not monolithic and no one centre of power knows and directs everything all the time. That’s why when the central authorities come across local officials doing stuff that hurts it embarrasses them, they impose such harsh penalties, including death. You don’t have to punish behaviour that doesn’t happen.


It's funny you should say this because the truth is different, it's a lot less monolithic and centralized than you think.

Here is a report titled "Understanding china's political system"

https://fas.org/sgp/crs/row/R41007.pdf


This is just classic American black-and-white national morality thinking. You see the same thing applied all the time to the citizenry of North Korea - "they're all brainwashed and totally absolutely follow the leader" - the unstated subtext being "so when the US military invades and kills a whole lot of them, really we had no choice and this was the right and just thing to do for our defense".

Which doesn't really square up with the extensive border smuggling operations into and out of China, the defusion of illegal portable media players and thumbdrives carrying outside news, or the methamphetamine epidemic they're suffering.


> It doesn’t allow anything except for a monolithic view.

And yet somehow even the most ill-informed Americans hear all about things the CCP doesn't want anyone to hear about. Doesn't sound like very tight control.


This suggests a Bayesian approach. If there is a lab leak, we'd expect a Chinese cover-up to be a more likely than a Chinese cover-up to a zoological origin. So if your priors are that the zoological and lab-leak origins are equally likely, the evidence of Chinese cover-up weighs in favor of the lab leak hypothesis.


That's only true if you assume China has perfect knowledge of the source of the leak from the very start in both scenarios.

In the zoological scenario, they wouldn't have any idea where it came from and might suspect it could be a lab leek simply based on the origin. It's very likely they would engage in cover-up behaviour anyway, just out of caution.

And then there are other reasons why they might decide to cover things up.

Ironically, a Chinese cover-up is absolutely useless evidence towards a lab leak hypothesis.


My priors disagree. I'd expect similar likelihood of a chinese coverup regardless of culpability. The embarrassment is too high in both situations


China covered up SARS too and to a much greater extent, and we know that it was zoological. So my prior disagree with yours


Occam's Razor. We know viruses jump species because it's happened before and we understand the mechanism. The lab leak theory requires a lot of unlikely things to happen. Don't spread misinformation.


It’s unlikely for a SARS virus to escape? It happened twice in Beijing in the same lab https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7096887/

The only reason we know is that this is pre Xi China.


Occam's Razor by far leans in the other direction. Species jumps are incredibly rare and lab leaks while not common have also happened before. Add in the fact that it happens to start in a city with a lab researching the same kind of virus.....


In the wake of COVID-19, one of the interesting bits of research was the use of a much broader COVID-19 type test to try and find new novel viruses.

And pretty much the moment it was developed, a new coronavirus in the midst of jumping species was found in hospitalized patients with pnuemonia-like symptoms [1].

Basically once they went looking, in 2% of the sample group they found people who were infected with a canine coronavirus, but who did not seem to be able to infect other people with it.

The likely scenario is that viruses are jumping species all the time, but rarely succeed in causing illness we don't simply write off as "a bout of pneuomonia from a seasonal something" due to lack of severity or lack of ability to spread human to human.

[1] https://www.cidrap.umn.edu/news-perspective/2021/05/another-...


Species jumps are definitely not rare. This virus already jumped to literally a dozen species in a year.

It's estimated that dozens of viruses jump to humans every year, it's just unlikely that they survive long enough to mutate to adapt to the human body.


Coronavirus species jumps have happened at least twice (three times if you include Covid-19) in my adult memory. Perhaps they’re just not as “incredibly rare” as they once were?


Oh wow. The coverup, the first cases being right next to WIV the only BSL4 and studying coronaviruses, WIV having multiple recent virus leaks… Occam’s razor definitely applies but not the way you’re alluding to.


If it happened anywhere in the world, then yes.... It happening in a city where there is a lab, working with those types of viruses, makes it a very "interesting coincidence".


I read China was the only major country to grow their GDP during Covid. Does that answer your question sufficiently?


It's always an interesting experiment to assume that the outcome was the desired result and look to see who benefits.


And who benefited? American Billionaires?


Among others. Corrupt government officials in all countries, car insurance agencies, certainly Chinese billionaires and billionaires of almost all countries, the US Democratic Party, even.


This implies that there was some massive conspiracy involving these parties to do what? manufacture and release this in the wild?


No, that's precisely my point, there is no conspiracy and qui bono is not sufficient. I was being unclear perhaps, but I was trying to suscitate your incredulity. Just because someone benefits doesn't mean they intended it.


Agreed, seems like it’s harder to tell everyday what is considered a serious conspiracy theory and what is beyond the pale. In fact I am not sure any conspiracy theory is now considered beyond the pale, seems like anything one comes up with will eventually generate a set of believers / adherents.


Please, do go on. Flesh out your theory for us to read and understand.


Following conspiracy theory: Google and the rest of the deep state originally wanted to develop a bio weapon, for which bats are perfect as incubators, while using Chinese labs, because it's illegal in the US to do so (also in China BTW), but it never was successful because they were using equipment from TaoBao. When some lab assistant didn't wash his hands properly before going for lunch at the wet market down the street, the virus leaked, but it's only a bit more aggressive than its original form, which was basically a mild cold. Now they blame China for it, using all their psyops tactics, mainly their mind control project Blue Bird (https://mind-control.fandom.com/en/wiki/Project_BLUEBIRD), also known as project ARTICHOKE or Twitter, because some insane elites think, the world would be better off if most people would die from a thermo nuclear WW3, while China really would like to avoid a war if possible. When China realized what the US was doing in their labs, they panicked and started trying to do damage control, not realizing that all their P&R attempts at face keeping are futile, because everyone thinks they're the embodiment of evil, not matter what they're doing.


I would be interested in knowing what other sequences were deleted and how common it is to delete from this DB.


Because of the highly politicalized nature, some Chinese scientists begin to deposit SARS-CoV-2 sequences to their own databases (hosted in China).

https://ngdc.cncb.ac.cn/ncov/release_genome https://db.cngb.org/


Please keep nationalistic swipes out of HN comments. They only make things worse. Your post would be fine without the first bit.

https://news.ycombinator.com/newsguidelines.html


i agree. sorry.


it is possible they changed mind and chose to deposit there.


Why? They are worried about American scientists chasing after them?


It is a political thing. Japan has DDBJ (https://www.ddbj.nig.ac.jp/index-e.html). EU has ENA/EBI (https://www.ebi.ac.uk/ena/browser/home). Maybe China wants to have its own.

More Chinese institutes are encouraging their scientists to deposit human bio-sample data to their own servers. Some grants even require them to do so.


Soft delete villain hit again


If I remember correctly, the disappearance of these sequences was discussed more than a year ago in Bret Weinstein's podcast, among many other indicators of a lab leak:

https://youtu.be/q5SRrsr-Iug?t=1843

He's been the canary in the coal mine on numerous issues surrounding COVID.

edit: listen from 30:43, also from 25:11: https://youtu.be/q5SRrsr-Iug?t=1511


You're thinking of the WIV database that was offlined 12 September.

This is new. We don't know why the sequence was deleted; the submitter cited "version control" reasons (data was being submitted somewhere else) but then deleted both known copies.


See an earlier post for reason. Looks like they resubmitted somewhere else and wanted the copy to ne deleted


Except the only other known copy was also deleted :/

"It turns out that mention of the sequencing project in question (PRJNA612766) also disappeared from China National GeneBank (CNGB) shortly after it was removed from the NIH Sequence Read Archive. (2/n)"

https://twitter.com/jbloom_lab/status/1407542296497688580?s=...


> among many other indicators of a lab leak:

literally nothing in this article or in the sequences is indication of a lab leak.

it isn't even particularly clear there is any cover up here, particularly since an article on the sequences was published.

if there's any deliberate suppression it would seem to be to hide the fact that scientists were studying the virus sooner than previously admitted and that they should have raised the alarm earlier.


Sadly he & his wife have repeatedly fostered confusion, the best example I have at hand are their comments[1] on Pres Biden's Executive Order 13991 - Protecting the Federal Workforce and Requiring Mask-Wearing[2]. When she said "the actual EO [...] doesn't actually specify that you're not required to wear a mask if you're away from people outside." which directly contradicts what was specified in the EO; "Such measures include wearing masks when around others". I find it difficult to take anything they say too seriously when they repeatedly make _mistakes_ like this.

> I have titled follow the science except when we want you to follow us and we're just going to pretend it's because we're talking science. One of the many executive orders that Biden has introduce President Biden on January 21st requires masks in national parks. [...] News reports on this tend to say masks required inside and outside when in crowded areas like overlooks, which you know, that that would sound reasonable. That sounds like, yes a hundred percent when you're indoors with strangers you should be wearing masks at this point Correct and you know in a really crowded place on overlooks ah okay sure but the actual EO [says...] [{reading of section 1 second paragraph only}] Thank you Zach. So that doesn't actually specify that you're not required to wear a mask if you're away from people outside. And that worries me because everyone who spends any time outside now and you all should be. Especially if you should be in whatever form...

[1] - https://youtu.be/wndotTtBTZQ?t=2799 [2] - https://www.whitehouse.gov/briefing-room/presidential-action...


Both Weinsteins constantly cry foul and have hot takes about literally everything so eventually maybe they will be right.


>He's been the canary in the coal mine on numerous issues surrounding COVID.

He's also been the carbon monoxide in the coal mine, steering people away from vaccines


Yeah, I don't agree with this assessment of the risks there.

The more people that are vaccinated, the shakier his argument becomes.

Covid19 has very real, well documented risks. The common vaccines have very low known risks by comparison. The space for unknown risks shrinks by the day.

That's the danger inherit with being a contrarian. Mostly you end up being wrong. It's a very important role though, to challenge accepted beliefs and create a dialog around them.


His main criticism is with

1. Not allowing dissenting opinions in the scientific community along with silencing any criticism from both media and big tech. If we are silencing dissenting view points, then are we really getting the truth?

2. Pushing it on pregnant women, kids and healthy youngsters where the risk vs reward isn't in favour.

3. Pushing it on people who have already recovered from COVID. There's no reason for this.

I was hoping that after what's happened in the last 1.5 year (and even past centuries), we would have learnt our lessons on how bad censorship is. But people don't learn their lessons. Bret correctly called it "intellectual authoritarianism".


Absolutely. It starts to get a little too deep down the rabbit hole for me saying that Ivermeticin being withheld is the "crime of the century" and that it isn't being used because it isn't patented and so there is no financial incentive to use it. It's a bold claim which I don't know how well is supported. But he deserves his uncensored say, especially since the whole lab-leak hypothesis debacle. Big Tech has acted shamefully in all of this. It is increasingly clear now.


I think 2 is debatable, and not vaccinating specific groups takes away from herd immunity, which hurts everyone. To be fair he discussed that criticism.

He's completely right about 1 and 3.


Everyone here hears about Weinstein literally every day. He and his brother may be the least silenced people in history. As well I have been twitter mobbed by Eric, making my account useless for quite a while. so he is perfectly happy to silence people who critique him I guess.


> least silenced people in history

His YouTube channel's already got strikes and videos taken down and demonetized. He's moving his podcast over to Odysee because of this. His ArticlesOfUnity twitter account (unrelated to COVID) was banned too.


Are they applying rules especially to him? Or are they not making exceptions for him?

I don't see a problem with the latter. It is almost always the latter.


> It is almost always the latter.

That tells me nothing will change your mind as it indicates that you still think social media censorship is anywhere remotely fair.


Not all vaccines are created equal.


Great point - The COVID19 Vaccines, particularly the mRNA ones are some of the best ever made, ~90% effective at preventing disease and ~100% effective at preventing death.


I'm starting to suspect this isn't because the vaccines are inherently particularly good, though. They're incredibly effective against one particular strain of Covid-19, and for a while that was pretty much the only thing in circulation, but as soon as more came along their effectiveness against those started to drop. Viruses less novel than Covid-19 presumably have a lot more genetic diversity, so being incredibly effective at one specific variant with one specific genome would achieve a lot less.

Honestly, I'm seriously starting to doubt whether it's even remotely feasible to achieve herd immunity with the current vaccines - the Delta variant is looking really worrying on that front.


This is factually incorrect. Of the four known COVID strains in broad circulation, the Moderna and Pfizer vaccines have displayed efficacy against all of them.

The Delta variant is more contagious, but has not demonstrated vaccine escape behavior against Pfizer and Moderna [1], and although efficacy was shown to be reduced by mutations in trials, both vaccines still successfully result in complete neutralization in of the virus by antibodies in test titres (in brief: you vaccinate people, then draw their blood and expose the antibodies to virus in vitro and see whether neutralization is effective - it was).

[1] https://www.theguardian.com/world/2021/jun/15/the-covid-delt...


This is a pretty ignorant response. There are many ways to judge a vaccine than its effectiveness. There are also side effects. And its pretty standard for people to get the "Pfizer-flu". That's a pretty major downside to a vaccine. And as well, we don't know the long-term health impacts. There may be heart issues related to taking the vaccine. We have to wait until the data comes in.


> That's a pretty major downside to a vaccine

The Shingrix vaccine is recommended for everyone over 50. It's a two-dose regimen to prevent shingles. If you've ever known anyone who has shingles, you'll rush to get those shots as soon as your doctor recommends it.

Guess what? The side effects can be rough. I know from personal experience: the second dose knocked me down for at least 24 hours. I felt awful and pretty much did nothing but sleep. By the evening of the next day, I was fine.

I also got my Pfizer vaccine shots around the same time, and had nothing worse than a sore arm. Even if someone had told me there was a 100% chance I'd have the same side effects from the COVID-19 vax as I did from Shingrix, I still wouldn't have hesitated. A day or two of feeling terrible versus the known dangers of COVID-19 is an easy choice.

Don't overplay the "major downside" bit.

Which COVID-19 vaccine did you get, and what side effects did you have, if any?


yep... plus issues with astrazeneca, where chances of clotting issues and death might be higher than covid deaths for specific groups (young women mostly). Killing two teenage girls to save a 100 grandmas is a hard math to do.


Do you have a source for those numbers?


I use Google, but there are alternatives. OP is obviously using very round numbers, but given that is not wrong.


Those numbers are wildly optimistic. I would like to see which studies you are quoting so I can review them.


For the Pfizer mRNA vaccine here are the results from studies in Israel.

https://pharmaceutical-journal.com/article/feature/everythin...

It gives a lot of data on chances of symptoms and illness at various periods after the first and second doses from various studies, however the bottom line is that long term the national level studies show that:

“The vaccine also provided 97.2% protection against hospitalisation overall and 97.5% protection against severe and critical hospitalisation.”

These are outstanding results, among the best of any vaccine ever developed, and from studies of large a large and diverse population.

It was 100% effective is a study of 2,000 12-15 year olds. This is important because in countries like Brazil where the death rate is incredibly high, even the small fraction of victims that are children adds up to many hundreds, or even thousands of deaths.


Maybe that’s why he is attacked by the mass media and big tech:

https://taibbi.substack.com/p/meet-the-censored-bret-weinste...


> intriguing new information for discerning when and how the virus may have spilled over from a bat or another animal into humans....linked to animal and seafood markets in December 2019

Amazing how the NYT is gripping onto this "bat origin" conspiracy theory for dear life. They present this as fact, then casually mention the actual cause is being investigated.

You'd expect the primary focus of this story to be the fact that virus sequences were "mysteriously deleted"...but instead it focuses on pressing a deceptive dialog that aligns with NYT political agenda. Shows you the current state of the media. Cancel your subscriptions.

I guess we'll have to rely on those crazy Q-anon people to actually investigate why these went missing in the first place.


Article behind the paywall. Can someone post the gist?


No matter what hypothesis you find most likely it is a shame, that the Chinese government hinders proper free scientific research in the origins. Chinese scientists should be free from censorship.




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