If it’s being controlled by Tokyo, why do they keep censoring Japanese games but not Western ones?

Why not? Regardless of the conversation above I don't understand this argument.

Toyota sells car with the driving wheel on the left in the USA. Does that make them less of a Japanese company?

No, but it's a terrible analogy. The equivalent would be if Toyota started selling only left-hand drive cars in Japan.

That would be if they censored games to Japanese standards everywhere, which they don't. They use different censorship rules (and wheel positions) in different countries.

I'm not going to argue how to do analogies on the Internet on a dead thread, but I'm confused about everything you say.