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I spent some time working on replacing the formulation of descent as a tree of species with a chain-complete partial order of organisms. Then you start trying to define things like "species" or "strain" or "genus" on that and realize that they don't correspond to any typical clumping of graphs.

Someone else already linked to ring species. In microbiology, the definition of species is "stop asking, we agreed to stop fighting about that, no, really, la-la-la-la." Horizontal gene transfer between species is ubiquitous.

In the end I started talking about populations occupying a niche in a specific place at a specific time, and very cautiously tracing properties among linkages of those. But I'm also the one who kept insisting to my labmates that a gene is not a locus of DNA.




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