Note-taking is just one aspect of the entire process, I even have a sub-heading for that. Calling the entire process just that doesn't do justice to it.
You may be confusing note-taking with rewriting notes as part of study. Most wouldn't use note-taking for both of those activities, whether in or out of college, and what the article author is doing is more like note rewriting, except he's using a system of tags and links to do a sort of emergent restatement of ideas.
He only linked to one. It's also not obvious what words may come off as pretentious for someone less experienced with English (I don't know OP or his background, but personally certainly didn't share your visceral negative reaction to the article title).
We just call this “note taking” in college