> - display JavaScript data structures in more visual way
Sort of? Is the existence of the 'inspect' function enough?
> - breakpoints on DOM changes, events and Ajax requests
I'm not sure about this. I mean, you can set the breakpoints in code per usual but I expect you mean setting them on the nodes themselves and perhaps global breakpoints in the net panel?
> - debugger API to work together with IDEs like Netbeans
It's possible with the remote debugging protocol but the only implementation I know of is the proof of concept that Paul Rouget put together two years ago, although I don't think he released any code.