Not to get too pedantic, but Java need not be involved, though it will certainly be the most common language involved. Anything running on a JVM (including Clojure, Scala, JRuby, etc.) could have the vulnerability if it uses the Apache Commons Collections library, or some other library that does (which is probably a lengthy list).
Its not really a problem with commons-collections and unfair to color it as their issue. Its like blaming the library that is part of a ROP chain for the exploit. The issue is what gets you in first, which is instantiating objects without any thought as to what they are from un-trusted sources.
Something that is called out in the Java secure coding guidelines:
That wasn't anti-Java snark. I was complaining that the headline format suggests some unusual thing in common for those projects. But it would immediately occur to you that they are all Java-based.